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Unfortunately the RDF Platform has no funding currently and as such support of this service is sporadic at best. If you are depending on the RDF Platform in your organization, or you are willing to consider funding the RDF platform, please contact us at rdf-req@ebi.ac.uk with details regarding your project. The EBI RDF Platform aims to bring together the efforts of a number of EMBL-EBI resources t
At EMBL's European Bioinformatics Institute (EMBL-EBI), we help scientists realise the potential of big data in biology.
www.ebi.ac.uk/~jgomez
Documentation How to install: put the biojs repository in your ocal machine. How to create: a tutorial which shows you how to create your own component. How to document: follow this tutorial to document your code and generate the working examples automatically. Reference Specification: a document which brings a detailed information about Biojs as well as its technical details. JsDoc: up-to-dat
View the latest EBI news stories and important announcements... more SMSD is a Java based software library for calculating Maximum Common Subgraph (MCS) between small molecules. This enables us to find similarity/distance between two molecules. MCS is also used for screening drug like compounds by hitting molecules, which share common subgraph (substructure).
Please note that this project is not maintained, and R Cloud is currently not running R Cloud Workbench Remote access to R/Bioconductor on EBI's 64-bit Linux Cluster Start the workbench by downloading the package for your operating system (Macintosh or Windows), or via Java Web Start, and you will get access to an instance of R running on one of EBI's powerful machines. You can install additional
iRAP: RNA-seq analysis tool A flexible pipeline for RNA-seq analysis that integrates many existing tools for filtering and mapping reads, quantifying expression and testing for differential expression. iRAP is used to process all RNA-seq data in Expression Atlas. Expression Atlas R Package on Bioconductor Search and download pre-packaged data from Expression Atlas inside an R session. Raw counts a
Our latest resource update paper is now out in Nucleic Acids Research! Find out more here! Download Download a full copy of the GWAS Catalog in spreadsheet format as well as current and older versions of the GWAS diagram in SVG format.
www.ebi.ac.uk/~zerbino
Velvet Sequence assembler for very short reads Current version: 1.2.10 Manual and extension for Columbus in pdf format Public Git URL: git clone git://github.com/dzerbino/velvet.git For up-to-date info, you can consult and/or subscribe to the mailing list. For transcriptomic assembly Velvet is extended by Oases. News 29/03/2011: Velvet 1.1 Velvet is now multithreaded, thanks to the use of the OMP
MEROPS the Database of Proteolytic Enzymes, their Substrates and Inhibitors Release 12.5 The MEROPS database is an information resource for peptidases (also termed proteases, proteinases and proteolytic enzymes) and the proteins that inhibit them. The Summary page describing a given peptidase can be reached by use of an index under its Name, MEROPS Identifier or source Organism. The Summary descri
About UniProt The mission of UniProt is to provide the scientific community with a comprehensive, high quality and freely accessible resource of protein sequence and functional information. UniProt is comprised of four components, each optimised for different uses: 1) The UniProt Knowledgebase (UniProtKB) is the central access point for extensive curated protein information, including function,
The page that you have requested is part of a service that is no longer directly maintained.The 2can web site is now closed as it is no longer maintained. Help and tutorials are available on the resource pages and at the Train Online site: http://www.ebi.ac.uk/training/online/ If you have any queries about the site please contact us via http://www.ebi.ac.uk/support
Services Data resources and analysis tools to support life science research EMBL’s European Bioinformatics Institute (EMBL-EBI) maintains the world’s most comprehensive range of freely available and up-to-date molecular data resources.
OLS is a repository for biomedical ontologies that aims to provide a single point of access to the latest ontology versions
The functional genomics data collection (ArrayExpress), stores data from high-throughput functional genomics experiments, and provides data for reuse to the research community. In line with community guidelines, a study typically contains metadata such as detailed sample annotations, protocols, processed data and raw data. Raw sequence reads from high-throughput sequencing studies are brokered to
InterPro provides functional analysis of proteins by classifying them into families and predicting domains and important sites. We combine protein signatures from a number of member databases into a single searchable resource, capitalising on their individual strengths to produce a powerful integrated database and diagnostic tool.
This website requires cookies, and the limited processing of your personal data in order to function. By using the site you are agreeing to this as outlined in our Privacy Notice and Terms of Use.
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Author: , ES Group, EMBL-European Bioinformatics Institute IP mapping by
M-CSA (Mechanism and Catalytic Site Atlas) is a database of enzyme reaction mechanisms that combines CSA and MACiE (Mechanism, Annotation and Classification in Enzymes). A new version is available here.
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About exonerate is a generic tool for pairwise sequence comparison. It allows you to align sequences using a many alignment models, using either exhaustive dynamic programming, or a variety of heuristics. If you have questions, you can email guy@ebi.ac.uk Documentation See the beginner's, advanced, and NEW:server user guides. For further details about using exonerate and examples, see man pages fo
EMBL's European Bioinformatics Institute EMBL-EBI Unleashing the potential of big data in biology Search
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The page that you have requested is part of a service that is no longer directly maintained.ASD resources have now closed. The last release is archived at ftp://ftp.ebi.ac.uk/pub/databases/astd Alternative splicing data has been incorporated into the Ensembl and Ensembl Genomes projects, which offer access to genomic data from vertebrate and non-vertebrate species respectively. Please contact the
BioModels is a repository of mathematical models of biological and biomedical systems. It hosts a vast selection of existing literature-based physiologically and pharmaceutically relevant mechanistic models in standard formats. Our mission is to provide the systems modelling community with reproducible, high-quality, freely-accessible models published in the scientific literature. More information
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