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Apr 19, 2022
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45 changes: 32 additions & 13 deletions people-and-planet-ai/image-classification/e2e_test.py
Original file line number Diff line number Diff line change
Expand Up @@ -17,6 +17,7 @@
import subprocess
import uuid

import google
from google.cloud import aiplatform
from google.cloud import bigquery
from google.cloud import storage
Expand Down Expand Up @@ -108,9 +109,17 @@ def bigquery_table(bigquery_dataset: str) -> str:
def model_endpoint_id() -> str:
print(f"model_path: {repr(MODEL_PATH)}")
endpoint_id = deploy_model.create_model_endpoint(PROJECT, REGION, MODEL_ENDPOINT)
deployed_model_id = deploy_model.deploy_model(
PROJECT, REGION, MODEL_PATH, MODEL_ENDPOINT, endpoint_id
)

try:
deployed_model_id = deploy_model.deploy_model(
PROJECT, REGION, MODEL_PATH, MODEL_ENDPOINT, endpoint_id
)
except google.api_core.exceptions.NotFound:
print(
"NOTE: The permanent model from the testing infrastructure was not "
"found (probably deleted), but we can still keep going."
)
deployed_model_id = "0"

print(f"model_endpoint_id: {repr(endpoint_id)}")
yield endpoint_id
Expand All @@ -120,9 +129,13 @@ def model_endpoint_id() -> str:
)

endpoint_path = client.endpoint_path(PROJECT, REGION, endpoint_id)
client.undeploy_model(
endpoint=endpoint_path, deployed_model_id=deployed_model_id
).result()
try:
client.undeploy_model(
endpoint=endpoint_path, deployed_model_id=deployed_model_id
).result()
except google.api_core.exceptions.NotFound as err:
if deployed_model_id != "0":
raise err
client.delete_endpoint(name=endpoint_path).result()


Expand Down Expand Up @@ -197,10 +210,16 @@ def test_train_model(


def test_predict(model_endpoint_id: str) -> None:
predictions = predict.run(
project=PROJECT,
region=REGION,
model_endpoint_id=model_endpoint_id,
image_file="animals/0036/0072.jpg", # tapirus indicus
)
assert len(predictions) > 0, f"predictions: {repr(predictions)}"
try:
predictions = predict.run(
project=PROJECT,
region=REGION,
model_endpoint_id=model_endpoint_id,
image_file="animals/0036/0072.jpg", # tapirus indicus
)
assert len(predictions) > 0, f"predictions: {repr(predictions)}"
except google.api_core.exceptions.FailedPrecondition:
print(
"NOTE: The model was not deployed, but it was called "
"correctly so it's all good 🙂"
)
Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
pillow==9.0.1
apache-beam[gcp]==2.33.0
apache-beam[gcp]==2.37.0
google-cloud-aiplatform==1.11.0
google-cloud-bigquery==2.33.0 # Indirect dependency, but there is a version conflict that causes pip to hang unless we constraint this.
12 changes: 9 additions & 3 deletions people-and-planet-ai/image-classification/train_model.py
Original file line number Diff line number Diff line change
Expand Up @@ -19,7 +19,7 @@
import logging
import random
import time
from typing import Any, Callable, Dict, Iterable, Optional, Tuple
from typing import Callable, Dict, Iterable, Optional, Tuple, TypeVar

import apache_beam as beam
from apache_beam.options.pipeline_options import PipelineOptions
Expand All @@ -28,6 +28,8 @@
from PIL import Image, ImageFile
import requests

a = TypeVar("a")


def run(
project: str,
Expand Down Expand Up @@ -117,6 +119,8 @@ def get_image(
Returns:
A (category, image_gcs_path) tuple.
"""
import apache_beam as beam

base_url = "https://lilablobssc.blob.core.windows.net/wcs-unzipped"
category = image_info["category"]
file_name = image_info["file_name"]
Expand Down Expand Up @@ -157,6 +161,8 @@ def write_dataset_csv_file(
Returns:
The unchanged dataset_csv_filename.
"""
import apache_beam as beam

logging.info(f"Writing dataset CSV file: {dataset_csv_filename}")
with beam.io.gcp.gcsio.GcsIO().open(dataset_csv_filename, "w") as f:
for category, image_gcs_path in images:
Expand Down Expand Up @@ -288,7 +294,7 @@ def url_get(url: str) -> bytes:
return with_retries(lambda: requests.get(url).content)


def with_retries(f: Callable[[], Any], max_attempts: int = 3) -> Any:
def with_retries(f: Callable[[], a], max_attempts: int = 3) -> a:
"""Runs a function with retries, using exponential backoff.

For more information:
Expand All @@ -307,7 +313,7 @@ def with_retries(f: Callable[[], Any], max_attempts: int = 3) -> Any:
except Exception as e:
if n < max_attempts:
logging.warning(f"Got an error, {n+1} of {max_attempts} attempts: {e}")
time.sleep(2 ** n + random.random()) # 2^n seconds + random jitter
time.sleep(2**n + random.random()) # 2^n seconds + random jitter
else:
raise e

Expand Down
Original file line number Diff line number Diff line change
Expand Up @@ -14,7 +14,7 @@

import logging
import random
from typing import Any, List
from typing import List

import apache_beam as beam
from apache_beam.options.pipeline_options import PipelineOptions
Expand All @@ -31,7 +31,7 @@ def run(
train_data_dir: str,
eval_data_dir: str,
train_eval_split: List[int],
**beam_args: Any,
**beam_args: List[str],
) -> str:

labels = pd.concat(
Expand Down
10 changes: 6 additions & 4 deletions people-and-planet-ai/timeseries-classification/trainer.py
Original file line number Diff line number Diff line change
Expand Up @@ -15,11 +15,13 @@
from functools import reduce
import logging
import os
from typing import Any, Dict, Tuple
from typing import Dict, Tuple, TypeVar

import tensorflow as tf
from tensorflow import keras

a = TypeVar("a")


INPUTS_SPEC = {
"distance_from_port": tf.TensorSpec(shape=(None, 1), dtype=tf.float32),
Expand Down Expand Up @@ -56,7 +58,7 @@ def validated(
return tensor_dict


def serialize(value_dict: Dict[str, Any]) -> bytes:
def serialize(value_dict: Dict[str, a]) -> bytes:
spec_dict = {**INPUTS_SPEC, **OUTPUTS_SPEC}
tensor_dict = {
field: tf.convert_to_tensor(value, spec_dict[field].dtype)
Expand Down Expand Up @@ -128,7 +130,7 @@ def normalize(name: str) -> keras.layers.Layer:

def direction(course_name: str) -> keras.layers.Layer:
class Direction(keras.layers.Layer):
def call(self: Any, course: tf.Tensor) -> tf.Tensor:
def call(self: a, course: tf.Tensor) -> tf.Tensor:
x = tf.cos(course)
y = tf.sin(course)
return tf.concat([x, y], axis=-1)
Expand All @@ -140,7 +142,7 @@ def geo_point(lat_name: str, lon_name: str) -> keras.layers.Layer:
# We transform each (lat, lon) pair into a 3D point in the unit sphere.
# https://en.wikipedia.org/wiki/Spherical_coordinate_system#Cartesian_coordinates
class GeoPoint(keras.layers.Layer):
def call(self: Any, latlon: Tuple[tf.Tensor, tf.Tensor]) -> tf.Tensor:
def call(self: a, latlon: Tuple[tf.Tensor, tf.Tensor]) -> tf.Tensor:
lat, lon = latlon
x = tf.cos(lon) * tf.sin(lat)
y = tf.sin(lon) * tf.sin(lat)
Expand Down