Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

Influenza forecasts visualizer

An experimental deep learning & genotype network-based system for predicting new influenza protein sequences.

🛡Crowd-sourced COVID-19 reporting and assessment system.

The Moving Epidemic Method R Package

A R statistical software package for estimating attributable influenza morbidity & mortality

GrippeWeb ist ein Online-Portal des Robert Koch-Instituts (RKI). Es wurde im Jahr 2011 gegründet und ist das erste Webportal, das die Aktivität akuter Atemwegserkrankungen (ARE) in Deutschland beobachtet, und dabei Informationen direkt aus der Bevölkerung verwendet. Es ist ein robustes und zeitnahes System der partizipativen syndromischen Survei...

Import script needed to build FluPRINT database from source 💻

🌏Record the last days of this earth. Don't they know this's the end of the world. It ended when you say good-bye.

The Flexible Epidemic Modeling Pipeline

vSNP -- validate SNPs

Gene and Primer Sequence Analysis for SARS-CoV-2, EGFR(Non Small Lung Cancer Cell), Influenza DNAs ### How can I check my Oligo primers to ensure there are no significant primer design issues? - The difference between melting temperatures (Tm) of the primers should be less than 5°C. - The GC content should be between 35-80% or equivalent to the …

Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution

Estimating the generation time for influenza transmission using household data in the United States

Flu clade and mutation frequencies

We apply combinatorial mutagenesis and next-generation sequencing to characterize the local fitness landscape in an antigenic region of NA in six different human H3N2 strains that were isolated around 10 years apart. This pipeline is used to analyze data and plotting.

A Python script that sends Italian flu updates to Mastodon

本项目开发了一个基于机器学习的禽流感病毒(H5N1)预测系统，旨在通过分析历史数据和实时社交媒体信息，对禽流感疫情进行预测和风险评估。该系统采用决策树算法结合 SMOTE 过采样技术，实现了对不平衡数据的有效处理和高精度预测。