All About Cells
All About Cells
All About Cells
Structure,
Function, and Definition
Prokaryotes are single-celled organisms that are the earliest and most primitive forms of
life on earth. As organized in the Three Domain System, prokaryotes
include bacteria and archaeans. Some prokaryotes, such as cyanobacteria,
are photosynthetic organisms and are capable of photosynthesis.
Many prokaryotes are extremophiles and are able to live and thrive in various types of
extreme environments including hydrothermal vents, hot springs, swamps, wetlands,
and the guts of humans and animals (Helicobacter pylori). Prokaryotic bacteria can be
found almost anywhere and are part of the human microbiota. They live on your
skin, in your body, and on everyday objects in your environment.
Prokaryotic cells are not as complex as eukaryotic cells. They have no true nucleus as
the DNA is not contained within a membrane or separated from the rest of the cell, but
is coiled up in a region of the cytoplasm called the nucleoid. Prokaryotic organisms have
varying cell shapes. The most common bacteria shapes are spherical, rod-shaped, and
spiral.
Using bacteria as our sample prokaryote, the following structures and organelles can be
found in bacterial cells:
Capsule - Found in some bacterial cells, this additional outer covering protects
the cell when it is engulfed by other organisms, assists in retaining moisture, and
helps the cell adhere to surfaces and nutrients.
Cell Wall - The cell wall is an outer covering that protects the bacterial cell and
gives it shape.
Cytoplasm - Cytoplasm is a gel-like substance composed mainly of water that
also contains enzymes, salts, cell components, and various organic molecules.
Cell Membrane or Plasma Membrane - The cell membrane surrounds the
cell's cytoplasm and regulates the flow of substances in and out of the cell.
Pili (Pilus singular)- Hair-like structures on the surface of the cell that attach
to other bacterial cells. Shorter pili called fimbriae help bacteria attach to
surfaces.
Flagella - Flagella are long, whip-like protrusion that aids in cellular
locomotion.
Ribosomes - Ribosomes are cell structures responsible for protein production.
Plasmids - Plasmids are gene carrying, circular DNA structures that are not
involved in reproduction.
Nucleiod Region - Area of the cytoplasm that contains the single bacterial DNA
molecule.
Prokaryotic cells lack organelles found in eukaryoitic cells such
as mitochondria, endoplasmic reticuli, and Golgi complexes. According to
the Endosymbiotic Theory, eukaryotic organelles are thought to have evolved from
prokaryotic cells living in endosymbiotic relationships with one another.
Like plant cells, bacteria have a cell wall. Some bacteria also have a polysaccharide
capsule layer surrounding the cell wall. It is in this layer where bacteria
produce biofilm, a slimy substance that helps bacterial colonies adhere to surfaces and
to each other for protection against antibiotics, chemicals, and other hazardous
substances.
Similar to plants and algae, some prokaryotes also have photosynthetic pigments. These
light-absorbing pigments enable photosynthetic bacteria to obtain nutrition from light.
Binary Fission
Binary fission begins with DNA replication of the single DNA molecule. Both
copies of DNA attach to the cell membrane.
Next, the cell membrane begins to grow between the two DNA molecules. Once
the bacterium just about doubles its original size, the cell membrane begins to
pinch inward.
A cell wall then forms between the two DNA molecules dividing the original cell
into two identical daughter cells.
Although E.coli and other bacteria most commonly reproduce by binary fission, this
mode of reproduction does not produce genetic variation within the organism.
Prokaryotic Recombination
The cell is a fundamental component of our modern definition of life and living things.
Cells are regarded as the basic building blocks of life and are used in the elusive
definition of what it means to be "alive."
Cells keep chemical processes tidy and compartmentalized so individual cell processes
do not interfere with others and the cell can go about its business of metabolizing,
reproducing, etc. To achieve this, cell components are enclosed in a membrane which
serves as a barrier between the outside world and the cell's internal chemistry. The cell
membrane is a selective barrier, meaning that it lets some chemicals in and others out.
In so doing it maintains the chemical balance necessary for the cell to live.
The cell membrane regulates the crossing of chemicals in and out of the cell in three
ways including:
Prokaryotes
Prokaryotes are organisms made up of cells that lack a cell nucleus or any membrane-
encased organelles. This means the genetic material DNA in prokaryotes is not bound
within a nucleus. In addition, the DNA is less structured in prokaryotes than in
eukaryotes: in prokaryotes, DNA is a single loop while in Eukaryotes DNA is organized
into chromosomes. Most prokaryotes are made up of just a single cell (unicellular) but
there are a few that are made of collections of cells (multicellular).
Scientists have divided the prokaryotes into two groups, the Bacteria, and the Archaea.
Some bacteria, including E Coli, Salmonella, and Listeria, are found in foods and can
cause disease; others are actually helpful to human digestion and other functions.
Archaea were discovered to be a unique life form which is capable of living indefinitely
in extreme environments such as hydrothermal vents or arctic ice.
Eukaryotes
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byHeather Scoville
Updated March 29, 2018
The earth was formed about 4.6 billion years ago. For a very long period of the earth's
history, there was a very hostile and volcanic environment. It is difficult to imagine any
life being viable in those types of conditions. It wasn't until the end of
the Precambrian Era of the Geologic Time Scale when life began to form.
There are several theories about how life first came to be on Earth. These theories
include the formation of organic molecules within what is known as the "Primordial
Soup", life coming to Earth on asteroids (Panspermia Theory), or the first primitive cells
forming in hydrothermal vents.
Prokaryotic Cells
The simplest type of cells were most likely the first type of cells that formed on Earth.
These are called prokaryotic cells. All prokaryotic cells have a cell membrane
surrounding the cell, cytoplasm where all of the metabolic processes happen, ribosomes
that make proteins, and a circular DNA molecule called a nucleoid where the genetic
information is held. The majority of prokaryotic cells also have a rigid cell wall that is
used for protection. All prokaryotic organisms are unicellular, meaning the entire
organism is only one cell.
Prokaryotic organisms are asexual, meaning they do not need a partner to reproduce.
Most reproduce through a process called binary fission where basically the cell just
splits in half after copying its DNA. This means that without mutations within the DNA,
offspring are identical to their parent.
All organisms in the taxonomic domains Archaea and Bacteria are prokaryotic
organisms. In fact, many of the species within the Archaea domain are found within
hydrothermal vents. It is possible they were the first living organisms on Earth when life
was first forming.
Eukaryotic Cells
The other, much more complex, type of cell is called the eukaryotic cell. Like
prokaryotic cells, eukaryotic cells have cell membranes, cytoplasm, ribosomes, and
DNA. However, there are many more organelles within eukaryotic cells. These include a
nucleus to house the DNA, a nucleolus where ribosomes are made, rough endoplasmic
reticulum for protein assembly, smooth endoplasmic reticulum for making lipids, Golgi
apparatus for sorting and exporting proteins, mitochondria for creating energy, a
cytoskeleton for structure and transporting information, and vesicles to move proteins
around the cell. Some eukaryotic cells also have lysosomes or peroxisomes to digest
waste, vacuoles for storing water or other things, chloroplasts for photosynthesis, and
centrioles for splitting the cell during mitosis. Cell walls can also be found surrounding
some types of eukaryotic cells.
Most eukaryotic organisms are multicellular. This allows the eukaryotic cells within the
organism to become specialized. Through a process called differentiation, these cells
take on characteristics and jobs that can work with other types of cells to create an
entire organism. There are a few unicellular eukaryotes as well. These sometimes have
tiny hair-like projections called cilia to brush away debris and may also have a long
thread-like tail called a flagellum for locomotion.
The third taxonomic domain is called the Eukarya Domain. All eukaryotic organisms fall
under this domain. This domain includes all animals, plants, protists, and fungi.
Eukaryotes may use either asexual or sexual reproduction depending on the organism's
complexity. Sexual reproduction allows more diversity in offspring by mixing the genes
of the parents to form a new combination and hopefully a more favorable adaptation for
the environment.
Since prokaryotic cells are simpler than eukaryotic cells, it is thought they came into
existence first. The currently accepted theory of cell evolution is called
the Endosymbiotic Theory. It asserts that some of the organelles, namely the
mitochondria and chloroplast, were originally smaller prokaryotic cells engulfed by
larger prokaryotic cells.
The Cell
What Are Cells?
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This is a colored transmission electron micrograph (TEM) of an Escherichia coli bacterium in
the early stages of binary fission, the process by which the bacterium divides. Credit:
CNRI/Getty Images
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byRegina Bailey
Updated January 27, 2019
Life is both wonderful and majestic. Yet for all of its majesty, all organisms are
composed of the fundamental unit of life, the cell. The cell is the simplest unit of matter
that is alive. From the unicellular bacteria to multicellular animals, the cell is one of
the basic organizational principles of biology. Let's look at some of the components of
this basic organizer of living organisms.
There are two primary types of cells: eukaryotic cells and prokaryotic cells. Eukaryotic
cells are called so because they have a true nucleus. The nucleus, which houses DNA, is
contained within a membrane and separated from other cellular structures. Prokaryotic
cells, however, have no true nucleus. DNA in a prokaryotic cell is not separated from the
rest of the cell but coiled up in a region called the nucleoid.
Classification
As organized in the Three Domain System, prokaryotes include archaeans and bacteria.
Eukaryotes include animals, plants, fungi and protists (ex. algae). Typically, eukaryotic
cells are more complex and much larger than prokaryotic cells. On average, prokaryotic
cells are about 10 times smaller in diameter than eukaryotic cells.
Cell Reproduction
Eukaryotes grow and reproduce through a process called mitosis. In organisms that
also reproduce sexually, the reproductive cells are produced by a type of cell division
called meiosis.
Most prokaryotes reproduce asexually and some through a process called binary fission.
During binary fission, the single DNA molecule replicates and the original cell is divided
into two identical daughter cells. Some eukaryotic organisms also reproduce asexually
through processes such as budding, regeneration, and parthenogenesis.
Cellular Respiration
Both eukaryotic and prokaryotic organisms get the energy they need to grow and
maintain normal cellular function through cellular respiration. Cellular respiration has
three main stages: glycolysis, the citric acid cycle, and electron transport. In eukaryotes,
most cellular respiration reactions take place within the mitochondria. In prokaryotes,
they occur in the cytoplasm and/or within the cell membrane.
There are also many distinctions between eukaryotic and prokaryotic cell structures.
The following table compares the cell organelles and structures found in a typical
prokaryotic cell to those found in a typical animal eukaryotic cell.
What Is an Organelle?
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byRegina Bailey
Updated June 28, 2018
An organelle is a tiny cellular structure that performs specific functions within a cell.
Organelles are embedded within the cytoplasm of eukaryotic and prokaryotic cells. In
the more complex eukaryotic cells, organelles are often enclosed by their
own membrane. Analogous to the body's internal organs, organelles are specialized and
perform valuable functions necessary for normal cellular operation. Organelles have a
wide range of responsibilities that include everything from generating energy for a cell
to controlling the cell's growth and reproduction.
01
of 02
Eukaryotic Organelles
Eukaryotic cells are cells with a nucleus. The nucleus is an organelle that is surrounded
by a double membrane called the nuclear envelope. The nuclear envelope separates the
contents of the nucleus from the rest of the cell. Eukaryotic cells also have a cell
membrane (plasma membrane), cytoplasm, cytoskeleton, and various cellular
organelles. Animals, plants, fungi, and protists are examples of eukaryotic organisms.
Animal and plant cells contain many of the same kinds or organelles. There are also
certain organelles found in plant cells that are not found in animal cells and vice versa.
Examples of organelles found in plant cells and animal cells include:
Nucleus - a membrane bound structure that contains the cell's hereditary (DNA)
information and controls the cell's growth and reproduction. It is commonly the
most prominent organelle in the cell.
Mitochondria - as the cell's power producers, mitochondria convert energy into
forms that are usable by the cell. They are the sites of cellular respiration which
ultimately generates fuel for the cell's activities. Mitochondria are also involved in
other cell processes such as cell division and growth, as well as cell death.
Endoplasmic Reticulum - extensive network of membranes composed of both
regions with ribosomes (rough ER) and regions without ribosomes (smooth ER).
This organelle manufactures membranes,
secretory proteins, carbohydrates, lipids, and hormones.
Golgi complex - also called the Golgi apparatus, this structure is responsible for
manufacturing, warehousing, and shipping certain cellular products, particularly
those from the endoplasmic reticulum (ER).
Ribosomes - these organelles consist of RNA and proteins and are responsible for
protein production. Ribosomes are found suspended in the cytosol or bound to
the endoplasmic reticulum.
Lysosomes - these membranous sacs of enzymes recycle the cell's organic
material by digesting cellular macromolecules, such as nucleic acids,
polysaccharides, fats, and proteins.
Peroxisomes - Like lysosomes, peroxisomes are bound by a membrane and
contain enzymes. Peroxisomes help to detoxify alcohol, form bile acid, and break
down fats.
Vacuole - these fluid-filled, enclosed structures are found most commonly in
plant cells and fungi. Vacuoles are responsible for a wide variety of important
functions in a cell including nutrient storage, detoxification, and waste
exportation.
Chloroplast - this chlorophyll containing plastid is found in plant cells, but not
animal cells. Chloroplasts absorb the sun's light energy for photosynthesis.
Cell Wall - this rigid outer wall is positioned next to the cell membrane in most
plant cells. Not found in animal cells, the cell wall helps to provide support and
protection for the cell.
Centrioles - these cylindrical structures are found in animal cells, but not plant
cells. Centrioles help to organize the assembly of microtubules during cell
division.
Cilia and Flagella - cilia and flagella are protrusions from some cells that aid in
cellular locomotion. They are formed from specialized groupings
of microtubulescalled basal bodies.
02
of 02
Prokaryotic Cells
Prokaryotic cells have a structure that is less complex than eukaryotic cells. They do not
have a nucleus or region where the DNA is bound by a membrane. Prokaryotic DNA is
coiled up in a region of the cytoplasm called the nucleoid. Like eukaryotic cells,
prokaryotic cells contain a plasma membrane, cell wall, and cytoplasm. Unlike
eukaryotic cells, prokaryotic cells do not contain membrane-bound organelles. However,
they do contain some non-membranous organelles such as ribosomes, flagella, and
plasmids (circular DNA structures that are not involved in reproduction). Examples of
prokaryotic cells include bacteria and archaeans.
Introduction
What would it be like to live in a one-room cabin? Well, things would
probably be pretty simple. You would eat, sleep, work, and relax in a single
room—which might be a bit cramped, but would certainly make cleaning the
house a snap!
Prokaryotic cells, the simple cells of organisms like bacteria, are sometimes
compared to one-room cabins: they don't have internal membranes, so they’re
like a single room with no walls to carve it up^11. If we extend this analogy
to eukaryotic cells, the more complex cells that make up plants, fungi, and
animals, we'll find that they're a definite step upward in the real estate
market.
Just as a large family home is split into many rooms with different purposes
(bedrooms, bathrooms, kitchen, living room, etc.), so eukaryotic cells contain
a variety of different compartments with specialized functions, neatly
separated from one another by layers of membrane. This organization lets
each compartment maintain its own conditions, the ones it needs to carry out
its job.
For instance, compartments called lysosomes, which act as recycling centers
for the cell, must maintain an acidic pH in order to dispose of cellular waste.
Similarly, structures called peroxisomes carry out chemical reactions called
oxidation reactions and produce hydrogen peroxide, both of which would
damage the cell if they weren’t safely stored away in their own “room.”
Eukaryotic cells are much more complicated than those of prokaryotes. They
are packed with a fascinating array of subcellular structures that play
important roles in energy balance, metabolism, and gene expression.
In the articles and videos that follow, we’ll take a tour through eukaryotic
plant and animal cells, exploring the unique structures they contain and the
role that each structure plays in the life of the cell.
Already know what part of the cell you want to visit? Use the list below to
jump to your region of interest:
Key terms
Term Meaning
Endosymbiotic Theory proposing that eukaryotic cells formed from a
theory symbiotic relationship among prokaryotic cells
Small (1-5
Size micrometers) Larger (10-100 micrometers)
Can be unicellular or
Cell structure Always unicellular multicellular
This theory proposes that organelles like mitochondria and chloroplasts were
once free-living prokaryotic cells that began to live within a larger host cell.
Over a long time, the prokaryotes and their hosts evolved together until one
could not function without the other.
Introduction
Each cell of your body is encased in a tiny bubble of membrane. This
membrane has about the consistency of...salad oil^11. The first time I read
that factoid, I didn't find it very reassuring! Salad oil seems like an awfully
fragile boundary to place between a cell and the rest of the world. Luckily,
the plasma membrane turns out to be very well-suited to its job, salad oil
texture and all.
What exactly is its job? The plasma membrane not only defines the borders
of the cell, but also allows the cell to interact with its environment in a
controlled way. Cells must be able to exclude, take in, and excrete various
substances, all in specific amounts. In addition, they must able to
communicate with other cells, identifying themselves and sharing
information.
To perform these roles, the plasma membrane needs lipids, which make a
semi-permeable barrier between the cell and its environment. It also needs
proteins, which are involved in cross-membrane transport and cell
communication, and carbohydrates (sugars and sugar chains), which decorate
both the proteins and lipids and help cells recognize each other.
Here, we’ll take a closer look at the different components of the plasma
membrane, examining their roles, their diversity, and how they work together
to make a flexible, sensitive, and secure boundary around the cell.
Interestingly enough, this fluidity means that if you insert a very fine needle
into a cell, the membrane will simply part to flow around the needle; once the
needle is removed, the membrane will flow back together seamlessly.
Image of the plasma membrane, showing the phospholipid bilayer with
peripheral and integral membrane proteins, glycoproteins (proteins with a
carbohydrate attached), glycolipids (lipids with a carbohydrate attached), and
cholesterol molecules.
Image modified from OpenStax Biology.
Membrane proteins may extend partway into the plasma membrane, cross the
membrane entirely, or be loosely attached to its inside or outside face.
Carbohydrate groups are present only on the outer surface of the plasma
membrane and are attached to proteins, forming glycoproteins, or lipids,
forming glycolipids.
Phospholipids
Phospholipids, arranged in a bilayer, make up the basic fabric of the plasma
membrane. They are well-suited for this role because they are amphipathic,
meaning that they have both hydrophilic and hydrophobic regions.
Chemical structure of a phospholipid, showing the hydrophilic head and
hydrophobic tails.
Image credit: OpenStax Biology.
Proteins
Proteins are the second major component of plasma membranes. There are
two main categories of membrane proteins: integral and peripheral.
Image of a single-pass transmembrane protein with a single membrane-
spanning alpha helix and a three-pass transmembrane protein with three
membrane-spanning alpha helices.
Image credit: image modified from OpenStax Biology, originally by Foobar/Wikimedia Commons.
Integral membrane proteins are, as their name suggests, integrated into the
membrane: they have at least one hydrophobic region that anchors them to
the hydrophobic core of the phospholipid bilayer. Some stick only partway
into the membrane, while others stretch from one side of the membrane to the
other and are exposed on either side^11. Proteins that extend all the way
across the membrane are called transmembrane proteins.
The portions of an integral membrane protein found inside the membrane are
hydrophobic, while those that are exposed to the cytoplasm or extracellular
fluid tend to be hydrophilic. Transmembrane proteins may cross the
membrane just once, or may have as many as twelve different membrane-
spanning sections. A typical membrane-spanning segment consists of 20-25
hydrophobic amino acids arranged in an alpha helix, although not all
transmembrane proteins fit this model. Some integral membrane proteins
form a channel that allows ions or other small molecules to pass, as shown
below.
_Image credit: "Components and structure: Figure 1," by OpenStax College, Biology (CC BY 3.0)._
Peripheral membrane proteins are found on the outside and inside surfaces
of membranes, attached either to integral proteins or to phospholipids. Unlike
integral membrane proteins, peripheral membrane proteins do not stick into
the hydrophobic core of the membrane, and they tend to be more loosely
attached.
Carbohydrates
Carbohydrates are the third major component of plasma membranes. In
general, they are found on the outside surface of cells and are bound either to
proteins (forming glycoproteins) or to lipids (forming glycolipids). These
carbohydrate chains may consist of 2-60 monosaccharide units and can be
either straight or branched.
Membrane fluidity
The structure of the fatty acid tails of the phospholipids is important in
determining the properties of the membrane, and in particular, how fluid it is.
Saturated fatty acids have no double bonds (are saturated with hydrogens),
so they are relatively straight. Unsaturated fatty acids, on the other hand,
contain one or more double bonds, often resulting in a bend or kink. (You can
see an example of a bent, unsaturated tail in the diagram of phospholipid
structure that appears earlier in this article.) The saturated and unsaturated
fatty acid tails of phospholipids behave differently as temperature drops:
At cooler temperatures, the straight tails of saturated fatty acids can pack
tightly together, making a dense and fairly rigid membrane.
Phospholipids with unsaturated fatty acid tails cannot pack together as tightly
because of the bent structure of the tails. Because of this, a membrane
containing unsaturated phospholipids will stay fluid at lower temperatures
than a membrane made of saturated ones.
Key terms
Term Meaning
Specialized structure that surrounds the cell and its
internal environment; controls movement of
Cell membrane substances into/out of cell
The unique structure of the cell membrane allows small substances (like
oxygen or carbon dioxide) to easily pass through.
The cell membrane contains a phospholipid bilayer, but the terms are
not interchangeable. Part of the cell membrane is a phospholipid bilayer,
made of two layers of phospholipid molecules. However, the cell membrane
also contains other macromolecules like membrane proteins, and
carbohydrates. Therefore, we can say that the cell membrane is made of a
phospholipid bilayer, but it is not only made of it.
What is a cell
Right now your body is doing a million things at once. It’s sending electrical
impulses, pumping blood, filtering urine, digesting food, making protein,
storing fat, and that’s just the stuff you’re not thinking about! You can do all
this because you are made of cells — tiny units of life that are like
specialized factories, full of machinery designed to accomplish the business
of life. Cells make up every living thing, from blue whales to the
archaebacteria that live inside volcanos. Just like the organisms they make
up, cells can come in all shapes and sizes. Nerve cells in giant squids can
reach up to 12m [39 ft] in length, while human eggs (the largest human cells)
are about 0.1mm across. Plant cells have protective walls made of cellulose
(which also makes up the strings in celery that make it so hard to eat) while
fungal cell walls are made from the same stuff as lobster shells. However,
despite this vast range in size, shape, and function, all these little factories
have the same basic machinery.
There are two main types of cells, prokaryotic and eukaryotic. Prokaryotes
are cells that do not have membrane bound nuclei, whereas eukaryotes do.
The rest of our discussion will strictly be on eukaryotes. Think about what a
factory needs in order to function effectively. At its most basic, a factory
needs a building, a product, and a way to make that product. All cells have
membranes (the building), DNA (the various blueprints), and ribosomes (the
production line), and so are able to make proteins (the product - let’s say
we’re making toys). This article will focus on eukaryotes, since they are the
cell type that contains organelles.
Protein production; in
Rough Endoplasmic particular for export out Primary production
Reticulum (RER) of the cell line - makes the toys
Lipid Destruction;
contains oxidative Security and waste
Peroxisome enzymes removal
Nucleus
Our DNA has the blueprints for every protein in our body, all packaged into a
neat double helix. The processes to transform DNA into proteins are known
as transcription and translation, and happen in different compartments within
the cell. The first step, transcription, happens in the nucleus, which holds our
DNA. A membrane called the nuclear envelope surrounds the nucleus, and its
job is to create a room within the cell to both protect the genetic information
and to house all the molecules that are involved in processing and protecting
that info. This membrane is actually a set of two lipid bilayers, so there are
four sheets of lipids separating the inside of the nucleus from the cytoplasm.
The space between the two bilayers is known as the perinuclear space.
Though part of the function of the nucleus is to separate the DNA from the
rest of the cell, molecules must still be able to move in and out (e.g., RNA).
Proteins channels known as nuclear pores form holes in the nuclear envelope.
The nucleus itself is filled with liquid (called nucleoplasm) and is similar in
structure and function to cytoplasm. It is here within the nucleoplasm where
chromosomes (tightly packed strands of DNA containing all our blueprints)
are found.
Cartoon showing mRNA preparing to leave the nucleus and enter the
cytoplasm.
Nucleolus
Within the nucleus is a small subspace known as the nucleolus. It
is not bound by a membrane, so it is not an organelle. This space forms near
the part of DNA with instructions for making ribosomes, the molecules
responsible for making proteins. Ribosomes are assembled in the nucleolus,
and exit the nucleus with nuclear pores. In our analogy, the robots making
our product are made in a special corner of the blueprint room, before being
released to the factory.
Endoplasmic Reticulum
Endoplasmic means inside (endo) the cytoplasm (plasm). Reticulum comes
from the Latin word for net. Basically, an endoplasmic reticulum is a plasma
membrane found inside the cell that folds in on itself to create an internal
space known as the lumen. This lumen is actually continuous with the
perinuclear space, so we know the endoplasmic reticulum is attached to the
nuclear envelope. There are actually two different endoplasmic reticuli in a
cell: the smooth endoplasmic reticulum and the rough endoplasmic reticulum.
The rough endoplasmic reticulum is the site of protein production (where we
make our major product - the toy) while the smooth endoplasmic reticulum is
where lipids (fats) are made (accessories for the toy, but not the central
product of the factory).
Different molecules actually have different fates upon entering the Golgi.
This determination is done by tagging the proteins with special sugar
molecules that act as a shipping label for the protein. The shipping
department identifies the molecule and sets it on one of 4 paths:
1. Cytosol: the proteins that enter the Golgi by mistake are sent back into the
cytosol (imagine the barcode scanning wrong and the item being returned).
2. Cell membrane: proteins destined for the cell membrane are processed
continuously. Once the vesicle is made, it moves to the cell membrane and
fuses with it. Molecules in this pathway are often protein channels which
allow molecules into or out of the cell, or cell identifiers which project into
the extracellular space and act like a name tag for the cell.
3. Secretion: some proteins are meant to be secreted from the cell to act on other
parts of the body. Before these vesicles can fuse with the cell membrane, they
must accumulate in number, and require a special chemical signal to be
released. This way shipments only go out if they’re worth the cost of sending
them (you generally wouldn’t ship just one toy and expect to profit).
4. Lysosome: The final destination for proteins coming through the Golgi is the
lysosome. Vesicles sent to this acidic organelle contain enzymes that will
hydrolyze the lysosome’s content.
Cartoon representing the golgi apparatus sorting proteins into one of the four
paths described above: the cytosol, the cell membrane, secretion, or
lysosome.
Lysosome
The lysosome is the cell’s recycling center. These organelles are spheres full
of enzymes ready to hydrolyze (chop up the chemical bonds of) whatever
substance crosses the membrane, so the cell can reuse the raw material. These
disposal enzymes only function properly in environments with a pH of 5, two
orders of magnitude more acidic than the cell’s internal pH of 7. Lysosomal
proteins only being active in an acidic environment acts as safety mechanism
for the rest of the cell - if the lysosome were to somehow leak or burst, the
degradative enzymes would inactivate before they chopped up proteins the
cell still needed.
Peroxisome
Like the lysosome, the peroxisome is a spherical organelle responsible for
destroying its contents. Unlike the lysosome, which mostly degrades proteins,
the peroxisome is the site of fatty acid breakdown. It also protects the cell
from reactive oxygen species (ROS) molecules which could seriously
damage the cell. ROSs are molecules like oxygen ions or peroxides that are
created as a byproduct of normal cellular metabolism, but also by radiation,
tobacco, and drugs. They cause what is known as oxidative stress in the cell
by reacting with and damaging DNA and lipid-based molecules like cell
membranes. These ROSs are the reason we need antioxidants in our diet.
Mitochondria
Just like a factory can’t run without electricity, a cell can’t run without
energy. ATP (adenosine triphosphate) is the energy currency of the cell, and
is produced in a process known as cellular respiration. Though the process
begins in the cytoplasm, the bulk of the energy produced comes from later
steps that take place in the mitochondria.
Like we saw with the nuclear envelope, there are actually two lipid bilayers
that separate the mitochondrial contents from the cytoplasm. We refer to
them as the inner and outer mitochondrial membranes. If we cross both
membranes we end up in the matrix, where pyruvate is sent after it is created
from the breakdown of glucose (this is step 1 of cellular respiration, known
as glycolysis).The space between the two membranes is called the
intermembrane space, and it has a low pH (is acidic) because the electron
transport chain embedded in the inner membrane pumps protons (H+) into it.
Energy to make ATP comes from protons moving back into the matrix down
their gradient from the intermembrane space.
Cytoskeleton
Within the cytoplasm there is network of protein fibers known as the
cytoskeleton. This structure is responsible for both cell movement and
stability. The major components of the cytoskeleton are microtubules,
intermediate filaments, and microfilaments.
Microtubules
Microtubules are small tubes made from the protein tubulin. These tubules
are found in cilia and flagella, structures involved in cell movement. They
also help provide pathways for secretory vesicles to move through the cell,
and are even involved in cell division as they are a part of the mitotic spindle,
which pulls homologous chromosomes apart.
Intermediate Filaments
Smaller than the microtubules, but larger than the microfilaments, the
intermediate filaments are made of a variety of proteins such as keratin
and/or neurofilament. They are very stable, and help provide structure to the
nuclear envelope and anchor organelles.
Microfilaments
Microfilaments are the thinnest part of the cytoskeleton, and are made of
actin [a highly-conserved protein that is actually the most abundant protein in
most eukaryotic cells]. Actin is both flexible and strong, making it a useful
protein in cell movement. In the heart, contraction is mediated through an
actin-myosin system.