Ecosystem element cycling

Introduction
An ecosystem consists of all the biological organisms and the physical environments they occupy together within a dened area [1]. The actual boundaries of an ecosystem are generally dened by researchers studying the ecosystem, who are usually interested in understanding the processes that control some aspects of ecosystem dynamics. Thus, the spatial domain of an ecosystem might range in size from a small pool of water in a tundra landscape to the tundra ecosystem of the Kuparuk River Basin in northern Alaska [2]. Ecosystem dynamics refers to changes in the biological and physical characteristics of ecosystems through time. The biological organisms in an ecosystem are responsible for a number of processes that affect ecosystem dynamics. For example, plants obtain carbon as carbon dioxide from the atmosphere through the process of photosynthesis, herbivores obtain carbon by consuming plants in an ecosystem, carnivores obtain carbon by eating animals in an ecosystem, and decomposers obtain carbon from dead organisms in an ecosystem. Physical processes also affect ecosystem dynamics. For example, the leaching of dissolved organic carbon in water owing through the soil of an ecosystem is one path through which terrestrial ecosystems may lose carbon to aquatic ecosystems like rivers and lakes. For our purposes here, ecosystem element cycling refers to the cycling of elements such as carbon within an ecosystem as well as the ow of elements into and out of an ecosystem. This article has several purposes: 1. to provide some basic biological and physical background on processes responsible for ecosystem element cycling; 2. to briey describe generalized carbon and nitrogen cycles in terrestrial ecosystems; 3. to discuss human modication of the global carbon and nitrogen cycles. Based in part on the article Ecosystem element cycling by A. David McGuire, which appeared in the Encyclopedia of Environmetrics.

Biological Background
Biological organisms are composed predominantly of water, which can be responsible for well over 50% of the wet mass of organisms. The dry mass of living organisms, which is composed of other molecules, is often referred to as biomass . There are four basic types of molecules that are important in maintaining and building biomass of organisms in an ecosystem: carbohydrates, fats, proteins, and nucleic acids. Carbohydrates and fats are important because energy is stored in chemical bonds involving carbon atoms, and energy is released as carbohydrates and fats are transformed to carbon dioxide and water in the presence of oxygen, a process referred to as aerobic respiration . Thus, to release energy required for maintaining and building biomass, oxygen is obtained from the environment and carbon dioxide and water are released to the environment. Carbohydrates and fats are also important components of cell structure, for example, cell walls in plants and cell membranes in animals. Proteins are important molecules because as enzymes they are responsible for catalyzing biochemical reactions. Also, proteins are important to the structure of organisms as muscle, hair, claws, and horns are rich in protein. In comparison to carbohydrates and fats, proteins contain substantial amounts of nitrogen in addition to carbon. Nucleic acids are important molecules because they contain information, the genetic blueprint, for building proteins that can catalyze certain biochemical reactions depending on the structure of the proteins. In addition to carbon and nitrogen, nucleic acids also contain substantial amounts of phosphorus. To maintain and build tissue, biological organisms also require a number of other elements besides carbon, nitrogen, and phosphorus. For example, sodium and potassium are important ions in many biochemical reactions and calcium is an important structural element in bones. Biological organisms must obtain needed elements in adequate quantities to avoid disease and death. Thus, the ow and cycling of elements in an ecosystem is important for maintaining the function and structure of biological organisms in the ecosystem. Biological organisms in an ecosystem are involved in sequestering elements from the physical environment, cycling elements in the ecosystem, and releasing elements to the environment. For example, green plants sequester carbon from the atmosphere through the process of photosynthesis, herbivores and

Encyclopedia of Environmetrics, Online 2006 John Wiley & Sons, Ltd. This article is 2013 US Government in the US and 2013 John Wiley & Sons, Ltd in the rest of the world. This article was published in Encyclopedia of Environmetrics Second Edition in 2012 by John Wiley & Sons, Ltd. DOI: 10.1002/9780470057339.vae011.pub2

Ecosystem element cycling

atmosphere is low. Soil moisture may inuence plant uptake of inorganic nitrogen released through decomposition of soil organic matter as uptake may be limited by diffusion through the soil solution to the roots. Soil properties and processes inuence many aspects of ecosystem element cycling. Geochemical transformations of the parent rock underlying an ecosystem are responsible for the development of the mineral soil, which is a source for a number of elements that become incorporated into the biological organisms of an ecosystem. For example, the weathering of rocks is an important source of phosphorus, which usually becomes dissolved as phosphate, a form of phosphorus that can be taken up by plants. Physical properties of soils also inuence ecosystem element cycling. For example, coarse-textured sandy soils hold less water than ne-textured clay soils. Also, the chemical properties of soils are important to ecosystem element cycling. For example, soils vary in the degree of net negative charge depending on the number of hydroxide ions (OH ) that are exposed to the soil solution. The hydroxide ions attract and bind to cations like sodium, potassium, and calcium, which depending on the pH of the soil solution, can be exchanged with the soil solution where the cations are available to be taken up by plants [4]. Finally, the organic matter of soils, which is derived from the senesced biomass of biological organisms, is an important reservoir of elements that are released by decomposition to the soil solution, where they are available for uptake by plants. Fire is an important physical process that can also affect element cycling in ecosystems. The spread of re in an ecosystem requires three components: (i) an ignition source, for example, lightning; (ii) dry fuels; and (iii) weather conducive to spreading the re. The combustion of organic matter stored in vegetation and soils releases elements such as carbon and nitrogen to the atmosphere. Fire is also responsible for the transfer of organic matter from living biomass to the dead organic matter pools in an ecosystem.

carnivores cycle carbon through the ecosystem, and decomposers release carbon back to the atmosphere. It is important to recognize that organisms do not necessarily have a single function with respect to ecosystem element cycling. For example, in addition to photosynthesis, green plants release carbon to the atmosphere through the process of aerobic respiration as do herbivores and carnivores. Also, each organism in an ecosystem is involved in the ow and cycling of many elements.

Physical Background
While biological organisms play important roles in the ow and cycling of elements in an ecosystem, the physical environment is also involved in ecosystem element cycling. Physical processes involving air (the atmosphere), water (the hydrosphere), and soil (the pedosphere) play important roles in ecosystem element cycling [3]. The atmosphere is an important reservoir for both carbon dioxide and nitrogen, which can enter ecosystems through biological and physical processes. For example, in aquatic ecosystems, the dissolution of carbon dioxide in water depends on the concentration gradient of carbon dioxide between air and water, and this gradient may depend on the sequestration of dissolved carbon dioxide by aquatic plants. Similarly, the atmosphere, which is approximately 80% gaseous nitrogen, is an important source of ecosystem nitrogen, which can enter through the physical deposition of ammonium and nitrate from the atmosphere as well as through biological nitrogen xation of gaseous nitrogen. The water cycle is important to ecosystem element cycles in a variety of ways. As organisms are predominantly composed of water, the availability of water is itself essential to the maintenance and construction of biomass in an ecosystem. The water cycle is also important to the ow of many elements into and out of ecosystems that occur via movements of water. For example, nitrogen may enter or leave an ecosystem dissolved in water as nitrate. The lateral ow of water across the terrestrial surface into the oceans is a means by which elements are transported from terrestrial ecosystems to aquatic ecosystems including ocean ecosystems. The water cycle also inuences many biological processes that cycle elements in an ecosystem. For example, the rate of carbon uptake from the atmosphere through the process of photosynthesis is generally low when the humidity of the

The Carbon and Nitrogen Cycles

As discussed earlier, the ability to acquire carbon and nitrogen is important to maintenance and construction of biomass by biological organisms in an ecosystem. These cycles are also important to humans because the production of food and ber by forest and

Encyclopedia of Environmetrics, Online 2006 John Wiley & Sons, Ltd. This article is 2013 US Government in the US and 2013 John Wiley & Sons, Ltd in the rest of the world. This article was published in Encyclopedia of Environmetrics Second Edition in 2012 by John Wiley & Sons, Ltd. DOI: 10.1002/9780470057339.vae011.pub2

Ecosystem element cycling

agricultural ecosystems depend on these cycles. It is important to recognize that these cycles are linked together as the availability of nitrogen can limit the uptake of carbon by ecosystems and the availability of carbon to nitrogen-xing bacteria can limit the input of nitrogen to an ecosystem [5, 6]. Here, the basic features of carbon and nitrogen cycles in terrestrial ecosystems are described (Figure 1). The carbon in green plants (CV in Figure 1), which are referred to as photo-autotrophs , is obtained from the atmosphere through the process of photosynthesis by using solar energy to chemically transform carbon dioxide to carbohydrates. The rate at which green

Atmospheric carbon dioxide

GPP RA LC RH

CV
VEGETATION

CS
SOIL

NVL

NRESORB NMOBIL

NVS

LN

NS
NETNMIN

NUPTAKEL
NINPUT

NUPTAKES

NAV

NLOST

Figure 1 A generalized diagram of carbon and nitrogen cycling in terrestrial ecosystems. The pools of carbon and nitrogen are: carbon in the vegetation (CV ); structural nitrogen in the vegetation (NVS ); labile nitrogen in the vegetation (NVL ); organic carbon in soils and detritus (CS ); organic nitrogen in soils and detritus (NS ); and available soil inorganic nitrogen (NAV ). Arrows show carbon and nitrogen uxes; GPP, gross primary production; RA , autotrophic respiration; RH , heterotrophic respiration; LC , litterfall carbon; LN , litterfall nitrogen; NUPTAKES , nitrogen uptake into the structural nitrogen pool of the vegetation; NUPTAKEL , nitrogen uptake into the labile nitrogen pool of the vegetation; NRESORB, nitrogen resorption from dying tissue into the labile nitrogen pool of the vegetation; NMOBIL, nitrogen mobilized from the labile pool of the vegetation to the structural pool of the vegetation; NETNMIN, net nitrogen mineralization of soil organic nitrogen; NINPUT, nitrogen inputs from outside the ecosystem; and NLOST, nitrogen losses from the ecosystem. Source : Reproduced from Climatic Change, 24, 1993, 287310, Productivity response of climax temperate forests to elevated temperature and carbon dioxide: A North American comparison between two global models, McGuire et al., with kind permission from Springer Science+Business Media B.V.

plants transform carbon dioxide to carbohydrates is gross primary production (GPP in Figure 1). The energy costs to green plants in maintaining and constructing biomass results in a loss of carbon to the atmosphere as autotrophic respiration (RA in Figure 1). The difference between GPP and RA is net primary production (NPP) which represents the net amount of carbon that has been acquired by the green plants of an ecosystem over a specied period of time. Through senescence of tissue and mortality, a rate which is termed litterfall carbon (LC in Figure 1), green plants in an ecosystem lose carbon to dead organic matter pools in the ecosystem, most of which are in the soil (CS in Figure 1). Here, soil organic matter is decomposed by soil heterotrophs, which release carbon to the atmosphere as heterotrophic respiration (RH in Figure 1). It is useful to note that plants also lose carbon to animals through herbivory, some of which is delivered to soil in fecal material that is not assimilated by animals and some of which is ultimately respired to the atmosphere by animals. As animals are heterotrophs, the term RH includes respiration by animals. Nitrogen enters the ecosystem (NINPUT in Figure 1) via biological nitrogen xation of gaseous nitrogen or through the deposition of ammonium and nitrate. Plants are able to take up ammonium and nitrate from the soil solution, inorganic forms of nitrogen that are grouped together as nitrogen available for plant and microbial uptake (NAV in Figure 1). Nitrogen that is taken up by plants can be directly incorporated into structural tissue (via NUPTAKES into NVS in Figure 1) or into storage as labile nitrogen for later use in constructing tissue (via NUPTAKEL into NVL in Figure 1). Labile nitrogen can be mobilized from storage for the construction of structural tissue (NMOBIL in Figure 1). Also, the resorption of nitrogen from senescing tissue (NRESORB in Figure 1), for example from deciduous leaves that are shed in autumn, puts nitrogen in storage that can be used in the construction of tissue at a later point in time. The resorption and mobilization of nitrogen into and out of storage represents the internal recycling of nitrogen within plants, and can be responsible for up to 80% of nitrogen used in constructing plant tissue [7]. The loss of nitrogen from plants to soils due to senescence and mortality, which is termed litterfall nitrogen (LN in Figure 1), becomes incorporated into soil organic matter. The decomposition of soil

Encyclopedia of Environmetrics, Online 2006 John Wiley & Sons, Ltd. This article is 2013 US Government in the US and 2013 John Wiley & Sons, Ltd in the rest of the world. This article was published in Encyclopedia of Environmetrics Second Edition in 2012 by John Wiley & Sons, Ltd. DOI: 10.1002/9780470057339.vae011.pub2

Ecosystem element cycling

of fertilizer applied on agricultural systems is thought to be responsible for the increasing concentrations of nitrous oxide in the atmosphere, which is an effective heat-trapping gas even more powerful than CO2 , and is also contributing to global warming. The application of fertilizers in agricultural ecosystems is also affecting aquatic ecosystems. For example, the nitrogen ux of rivers that empty into the North Atlantic Ocean has increased two to 20-fold since preindustrial times in association with human use of fertilizer [11]. This increase has implications for humans as high levels of nitrate in drinking water have health consequences. Also, the high levels of nitrogen in rivers have led to eutrophication of estuaries and coastal waters, which has been linked to toxic blooms of algae that have caused substantial mortality of sh and shellsh in estuaries. The burning of fossil fuels also releases nitrogen-based trace gases into the atmosphere. Some of this nitrogen is deposited into terrestrial ecosystems, with the highest levels in western Europe, in eastern China, and in the eastern United States. Because of interactions between carbon and nitrogen dynamics, the deposition of nitrogen has consequences for carbon dynamics of terrestrial ecosystems. Low levels of nitrogen deposition can fertilize the soil to result in high biomass production. In contrast, high levels of nitrogen deposition have damaging consequences on ecosystem function as negatively charged nitrates leach from the soil and carry away important cations such as potassium, calcium, and magnesium [12]. Thus, the use of nitrogen fertilizers and the deposition of nitrogen on terrestrial ecosystems have the potential to either increase or decrease the overall fertility of soils, which has consequences for the function and structure of these ecosystems. As human modications of ecosystem element cycles have wide-ranging effects on biological and physical functioning of the earth, these modications are also inuencing global politics. For example, there is an ongoing international debate concerning the actions required to stabilize CO2 concentrations in the atmosphere to prevent dangerous human interference with the climate system, and there are serious economic and environmental choices that depend on the stabilization scenario [13]. Negotiations as part of the United Nations Framework Convention on Climate Change have established a 2 C global warming target, and nations have been requested to voluntarily set appropriate targets for the reduction of greenhouse

organic matter by soil heterotrophs results in the mineralization of ammonium that enters the available nitrogen pool. Ammonium in the soil solution can also be taken up by soil heterotrophs for meeting the structural nitrogen requirements of these organisms and may undergo additional transformations by being converted to nitrate by nitrifying bacteria. Because soil hetertrophs both supply and use forms of nitrogen that are available to plants, the net rate at which nitrogen is provided to plants is termed net nitrogen mineralization (NETNMIN in Figure 1). Nitrate in the available nitrogen pool can be lost from the ecosystem (NLOST in Figure 1) through the process of denitrication, which releases gaseous nitrogen to the atmosphere through leaching of nitrate in the soil solution that ows out of the ecosystem and through disturbances like re.

Human Alteration of the Global Carbon and Nitrogen Cycles

Humans have substantially altered the global carbon cycle in several ways. First, nearly 50% of global net primary production has come under direct human management though agriculture (including grazing of domestic livestock) and forestry activities [8]. Human activities result in adding approximately 10 1015 g of carbon (Pg C) yr1 to the atmosphere through fossil fuel burning and cement production ( 9 Pg C yr1 ), and changing land cover and management practices, for example, tropical deforestation ( 1 Pg C yr1 ). Of this amount, approximately 5 Pg C yr1 is absorbed by ocean and terrestrial ecosystems and approximately 5 Pg C yr1 remains in the atmosphere, which is responsible for the current increase of approximately 1.9 ppmv CO2 per year in the atmosphere. Greenhouse gases like CO2 allow shortwave radiation to reach the surface of the earth, but trap long-wave energy that is radiated by the earths surface. Thus, the increasing concentration of atmospheric CO2 has been judged by the scientic community as very likely being the dominant cause responsible for the warming that has been occurring during the last 50 years [9]. Humans have also substantially modied the global nitrogen cycle in several ways [10]. The xation of nitrogen for fertilizer by industrial processes is approximately equal to the total biological nitrogen xation of terrestrial ecosystems. The large amount

Encyclopedia of Environmetrics, Online 2006 John Wiley & Sons, Ltd. This article is 2013 US Government in the US and 2013 John Wiley & Sons, Ltd in the rest of the world. This article was published in Encyclopedia of Environmetrics Second Edition in 2012 by John Wiley & Sons, Ltd. DOI: 10.1002/9780470057339.vae011.pub2

Ecosystem element cycling

gas emissions. Because global CO2 growth rates are increasing, it is unlikely that the target will be met by a voluntary nature of compliance with the reduction in emissions. Furthermore, warming may make large carbon pools vulnerable to release, such as through the thawing of carbon-rich permafrost soils and through more frequent re in the worlds forests. Future negotiations may lead to more drastic actions in more binding agreements. The use of fossil fuels by individual countries will certainly play a dominant role in these negotiations. Additionally, the storage or release of carbon by terrestrial ecosystems in individual countries is relevant to negotiations, and there is substantial interest in the implementation of a framework for Reduced Emissions from Deforestation and Degradation (REDD). Measuring, quantifying, and verifying changes in carbon storage of terrestrial ecosystems for individual countries require signicant improvements to meet the needs of future agreements related to the stabilization of CO2 concentrations in the atmosphere.
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(See also Earth observation programmes (EOP); Emission inventory; Emissions; Global ecology; Climate change scenarios for impacts assessment; Carbon capture and storage, regulatory framework; Biomass; Forest carbon cycling; Forest inventory; Global warming; Global environmental change) A. DAVID MCGUIRE

Encyclopedia of Environmetrics, Online 2006 John Wiley & Sons, Ltd. This article is 2013 US Government in the US and 2013 John Wiley & Sons, Ltd in the rest of the world. This article was published in Encyclopedia of Environmetrics Second Edition in 2012 by John Wiley & Sons, Ltd. DOI: 10.1002/9780470057339.vae011.pub2