selfstudys_com_file (24)
selfstudys_com_file (24)
selfstudys_com_file (24)
(Term I, 2021-22)
30. Meselson and Stahl carried out centrifugation in CsCl₂ density gradient to
separate:
(a) DNA from RNA (b) DNA from protein
(c) the normal DNA from 15N-DNA (d) DNA from tRNA.
(2020)
VSA (1 mark)
31. Write the dual purpose served by deoxyribo-nucleoside triphosphates in
polymerisation. (2018)
32. Name the source of energy for the replication of DNA.
(1/3, Delhi 2015C)
33. Why is it not possible for an alien DNA to become part of chromosome
anywhere along its length and replicate normally?
(AI 2014)
34. What will happen if DNA replication is not followed by cell division in a
eukaryotic cell?
(AI 2014C)
SA I (2 marks)
35. Discuss the role, the enzyme DNA ligase plays during DNA replication.
(Delhi 2016)
36. Show DNA replication with the help of a diagram only.
(Delhi 2014C)
SA II (3 marks)
37. Describe the experiment where Matthew Meselson and Franklin Stahl used
heavy isotope of nitrogen.
(2020)
38. Explain the mechanism of DNA replication with the help of a replication fork.
What role does the enzyme DNA ligase play in a DNA replication fork?
(Delhi 2019)
39. Answer the following questions based on Meselson and Stahl's experiment on
E.coli:
(a) Write the name of the chemical substance used as the only source of nitrogen
in the experiment.
(b) Why did they allow the synthesis of the light and the heavy DNA molecules in
the organism?
(c) How did they distinguish the heavy DNA molecules from the light DNA
molecules? Explain.
(d) Write the conclusion the scientists arrived at, at the end of the experiment.
(AI 2019)
40. (a) Why does DNA replication occur within a replication fork and not in its
entire length simultaneously?
(b) "DNA replication is continuous and discontinuous on the two strands within
the replication fork." Give reasons.
(2019)
41. Describe the experiment that helped demonstrate the semi-conservative
mode of DNA replication.
(Delhi 2016)
OR
How was a heavy isotope of nitrogen used to provide experimental evidence to
semi-conservative mode of DNA-replication?
(Foreign 2015)
OR
Describe Meselson and Stahl's experiment to prove that the DNA replication is
semi-conservative.
(3/5, AI 2015C)
LA (5 marks)
42. (i) Draw a labelled diagram of a replication fork in a prokaryote indicating the
process of DNA replication.
(ii) Differentiate between the two newly synthesised DNA strands within the
fork.
(iii) Name the enzymes involved in the process of DNA replication.
(iv) Name the eukaryote where the semi-mode of replication was conservative
experimentally proved.
(2023)
43. (a) Name the stage in cell cycle where DNA replication occur.
(b) Explain the mechanism of DNA replication. Highlight the role of enzymes in
the process.
(c) Why is DNA replication said to be semi-conservative?
(AI 2016)
44. Describe Meselson and Stahl's experiment that was carried in 1958 on E. coli.
Write the conclusion they arrived at after the experiment.
(AI 2016)
OR
Describe Meselson and Stahl's experiment and write the conclusion they arrived
at. (Foreign 2014)
45. (a) Draw a labelled diagram of a "replicating fork" showing the polarity. Why
does DNA replication occur within such 'forks?
(b) Name two enzymes involved in the process of DNA replication, along with
their properties.
(AI 2015)
46. Explain the process of DNA replication with the help of a replicating fork.
(Delhi 2015C)
47. (a) Explain the process of DNA replication with the help of a schematic
diagram.
(b) In which phase of the cell cycle does replication occur in eukaryotes? What
would happen if cell division is not followed after DNA replication?
(Delhi 2014)
5.5 Transcription
MCQ
48. A region of coding strand of DNA has the following nucleotide sequence 5′-
ATGCGGC-3′
The sequence of bases on mRNA transcribed by this would be
(a) 5'-AUGCGGC-3′ (b) 3′-AUGCGGC-3'
(c) 5'-TACGCCG-3′ (d) 3'-TACGCCG-5'
(Term I, 2021-22)
49. Which one of the following statement describe the function of the promoter in
a transcription unit?
(a) Signals the termination of polypeptide chain.
(b) Serves a sequence where transcription will initiate.
(c) Serves as DNA template for transcription to take place.
(d) Determines the first nucleotide to be transcribed into RNA.
(Term 1, 2021-22)
50. In a transcription unit in DNA the 'I' is located towards 3' end of the 'Il' strand
and it usually defines the end of the process of transcription.
Choose the correct I and II from the options given below.
(a) Terminator, coding (b) Promoter, template
(c) rho factor, template (d) sigma factor, coding,
(Term 1, 2021-22)
51. Given below is a heterogeneous RNA formed during eukaryotic transcription.
How many introns and exons respectively are formed in this hnRNA?
(a) 7,7 (b) 8,7 (c) 8,8 (d) 7,8
(Term 1, 2021-22)
52. In a bacterium, when RNA polymerase binds to the promoter on a
transcription unit during transcription, it
(a) terminates the process (b) helps remove introns
(c) initiates the process (d) inactivates the exons.
(2020)
VSA (1 mark)
53. What is a cistron?
(AI 2015)
54. Write the function of RNA polymerase II.
(Foreign 2015)
55. Name the enzyme that transcribes hnRNA in eukaryotes.
(Delhi 2015C)
56. Differentiate between exons and introns.
(1/3, AI 2015C)
SA I (2 marks)
57. Given below is one of the strands of a DNA segment:
(Delhi 2019)
64. With the help of a schematic diagram, explain the location and the role of the
following in a transcription unit:
Promoter, Structural gene, Terminator.
(Delhi 2014C)
65. (a) What are the transcriptional products of RNA polymerase III?
(b) Differentiate between 'Capping' and 'Tailing.
(c) Expand hnRNA.
(AI 2014C)
LA (5 marks)
66. Name the different types of RNA polymerases in a eukaryotic cell. Write their
roles in transcription.
(2020 C)
67. Name the type of cells and the process by which hnRNA is formed. Describe
the processingmechanism it undergoes before it becomes functional.
(2020)
68. Compare the processes of DNA replication and transcription in prokaryotes.
(2019 C)
69. (a) Describe the process of transcription in bacteria.
(b) Explain the processing the hnRNA needs to undergo before becoming
functional mRNA of eukaryotes.
(AI 2016)
70. Explain the process of transcription in prokaryotes. How is the process
different in eukaryotes?
(AI 2015)
71. Explain the process of transcription in eukaryotes.
(Foreign 2015)
72. Describe the process of transcription in a bacterium. (NCERT
Exemplar, Al 2014C)
5.6 Genetic Code
MCQ
73. Given below is a sequence of bases in mRNA of a bacterial cell. Identify the
amino acid that would be incorporated at codon position 3 and codon position 5
during the process of its translation.
3' AUCAGGUUUGUGAUGGUACGA 5'
(a) Phenylalanine, Methionine (b) Cysteine, Glycine
(c) Alanine, Proline (d) Serine, Valine
(2023)
74. When an amino acid is coded by more than one codon, the genetic code is said
to be
(a) universal (b) punctuate
(c) commaless (d) degenerate.
(Term I, 2021-22)
75. During elongation process of translation, the peptide
bond formation between amino acids is catalysed by
(a) ribosomal RNA (b) transfer RNA
(c) messenger RNA (d) small nuclear RNA.
(Term I, 2021-22)
VSA (1 mark)
76. Give an example of a codon having dual function.
(Delhi 2016)
77. How does a degenerate code differ from an unambiguous one?
(Foreign 2015)
SA I (2 marks)
78. State a functional difference between the following codons.
(a) AUG and UAA
(b) Specific and Degenerate
(2020)
79. Differentiate between the genetic codes given below:
(a) Unambiguous and Universal
(b) Degenerate and Initiator
(AI 2017)
80. Following are the features of genetic codes. What does each one indicate?
Stop codon; Unambiguous codon; Degenerate codon; Universal codon.
(AI 2016)
81. (a) Name the scientist who suggested that the genetic code should be made of
a combination of three nucleotides.
(b) Explain the basis on which he arrived at this conclusion.
(Delhi 2014)
82. One of the salient features of the genetic code is that it is nearly universal
from bacteria to humans. Mention two exceptions to this rule. Why are some
codes said to be degenerate?
(Foreign 2014)
SA II (3 marks)
83. (a) Name the scientist who postulated the presence of an adapter molecule
that can assist in protein synthesis.
(b) Describe its structure with the help of a diagram. Mention its role in protein
synthesis.
(Foreign 2014)
LA (5 marks)
84. (a) Write the contributions of the following scientists in deciphering the
genetic code.
George Gamow, Hargobind Khorana; Marshall Nirenberg; Severo Ochoa
(b) State the importance of a genetic code in protein biosynthesis.
(Delhi 2019)
85. (a) Describe the structure and function of a tRNA molecule. Why is it referred
to as an adapter molecule?
(b) Explain the process of splicing of hnRNA in a eukaryotic cell.
86. (a) What is a genetic code?
(AI 2017)
(b) Explain the following:
Degenerate code; Unambiguous code; Initiator code.
(Delhi 2014C)
5.7 Translation
MCQ
87. The different types of RNAs transcribed by RNA polymerase III in eukaryotes
are
(a) tRNA, hnRNA, 28S rRNA
(b) 28S rRNA, 18S rRNA, 5.8S rRNA
(c) tRNA, 5S rRNA, snRNAs
(d) hnRNA, 18S rRNA, 28S rRNA.
(Term I, 2021-22)
VSA (1 mark)
88. Write the two specific codons that a translational unit of mRNA is flanked by
one on either sides.
(AI 2015C)
SA I (2 marks)
89. What is aminoacylation? State its significance.
(AI 2016)
90. State the functions of ribozyme and release factor in protein synthesis
respectively. (AI 2015C)
91. Where does peptide bond formation occur in a bacterial ribosome and how?
(Foreign 2014)
92. Explain aminoacylation of tRNA.
(Delhi 2014C)
LA (5 marks)
93. Explain the relationship of ribosomes, tRNA and mRNA during the process of
translation in prokaryotes.
(2020)
OR
How do mRNA, tRNA and ribosomes help in the process of translation?
(AI 2015)
94. Name the major types of RNAs and explain their role in the process of protein
synthesis in a prokaryote.
(Foreign 2014)
95. Explain the process of translation.
(Delhi 2014C)
5.8 Regulation of Gene Expression
MCQ
96. Identify the correct labelling for Q, R, S and T for the lac operon in E. coli as
given below.
Choose the correct option from the given table.
(Term I, 2021-22)
SA I (2 marks)
97. How would lac operon operate in E. coli growing in a culture medium where
lactose is present as source of sugar?
(AI 2014C)
LA (5 marks)
98. Explain the expression of lac operon genes in E. coli growing in lactose
containing cultural medium.
(2020)
99. Explain the role of different genes in a lac operon when in a switched-on state.
(2020)
100. Study the schematic representation of the genes involved in the lac operon
given below and answer the questions that follow:
(a) Identify and name the regulatory gene in this operon. Explain its role in
'switching off' the operon.
(b) Why is the lac operon's regulation referred to as negative regulation?
(c) Name the inducer molecule and the products of the genes 'z' and 'y' of the
operon. Write the functions of these gene products.
(AI 2019)
101. Write the different components of a lac-operon in E. coli. Explain its
expression while in an 'open' state.
(AI 2017)
102. Explain the role of lactose as an inducer in a lac operon.
(Delhi 2016)
OR
Describe how the lac operon operates, both in the presence and absence of an
inducer in E. coli.
(AI 2014)
103. Sketch a schematic diagram of lac operon in switched on position. How is the
operon switched off? Explain.
(AI 2015C)
5.9 Human Genome Project
MCQ
104. Choose the chromosome in a human that possesses least number of genes.
(a) 21st chromosome (b) Autosome
(c) X chromosome (d) Y chromosome
(2020)
VSA (1 mark)
105. Write the scientific importance of single nucleotide polymorphism identified
in human genome.
(1/5, Foreign 2014)
SA I (2 marks)
106. State any four salient observations drawn from the Human Genome Project.
(2021 C)
107. Which human chromosome has (a) maximum number of genes, and which
one has (b) fewest genes?
(2/5, Foreign 2014)
SA II (3 marks)
108. Human Genome Project (HGP) was a mega project launched in the year
1990 with some important goals.
(a) Enlist any four prime goals of HGP.
(b) Name any one common non-human animal model organism which has also
been sequenced thereafter.
(2023)
109. What are 'SNPs'? Where are they located in a human cell? State any two
ways the discovery of SNPs can be of importance to humans.
(2020)
110. (a) List the two methodologies which were involved in human genome
project. Mention how they were used.
(b) Expand 'YAC' and mention what was it used for?
(AI 2017)
111. (a) What do 'Y' and 'B' stand for in 'YAC' and 'BAC' used in Human Genome
Project (HGP). Mention their role in the project.
(b) Write the percentage of the total human genome that codes for proteins and
the percentage of discovered genes whose functions are known as observed
during HGP.
(c) Expand 'SNPs' identified by scientists in HGP.
(AI 2016)
LA (5 marks)
112. (a) List any four major goals of human genome project.
(b) Write any four ways the knowledge from HGP is of significance for humans.
(c) Expand BAC and mention its importance.
(2020)
5.10 DNA Fingerprinting
MCQ
113. DNA profiles of the child and three individuals 1, 2 and 3 who claim to be the
parents of the child are given below. Select the option that shows the correct
actual parent/parents of the child.
(a) Individual 1 and 3
(b) Individual 1 and 2
(c) Individual 2 and 3
(d) Individual 1 is the only parent of the child amongst 1, 2 and 3
(2023)
114. Which one of the following techniques is used in DNA fingerprinting for the
detection of DNA?
(a) Northern blotting
(b) Western blotting
(c) Southern blotting
(d) In-situ hybridisation
(Term I, 2021-22)
VSA (1 mark)
115. How is repetitive/satellite DNA separated from bulk genomic DNA for
various genetic experiments?
(Delhi 2014)
116. How does DNA polymorphism arise in a population? (NCERT
Exemplar, Delhi 2014)
SA II (3 marks)
117. "A very small sample of tissue or even a drop of blood can help determine
paternity". Provide a scientific explanation to substantiate how it is possible.
(AI 2019, 2015)
118. (a) Expand VNTR and describe its role in DNA fingerprinting.
(b) List any two applications of DNA fingerprinting technique.
(2018)
119. A number of passengers were severely burnt beyond recognition during a
train accident. Name and describe a modern technique that can help in handing
over the dead to their relatives.
(Delhi 2017)
OR
Following the collision of two trains a large number of passengers are killed. A
majority of them are beyond recognition. Authorities want to hand over the dead
to their relatives. Name a modern scientific method and write the procedure that
would help in the identification of kinship.
(Delhi 2015)
120. Explain the significance of satellite DNA in DNA fingerprinting technique.
(AI 2015)
LA (5 marks)
121. Name and describe the steps involved in the technique widely used in
forensics that serves as the basis of paternity testing in case of disputes.
(2023)
122. (a) Name and describe the technique which is an important tool of forensic
science.
(b) Mention any two applications of this technique other than its use in forensic
studies. (2021 C)
123. (a) Name the type of DNA that forms the basis of DNA fingerprinting and
mention two features of this DNA.
(b) Write the steps carried out in the process of DNA fingerprinting technique
and mention its applications.
(2020)
(a) A is having 2'-OH group which makes it less reactive and structurally stable,
whereas B is having 2'-H group which makes it more reactive and unstable.
(b) A is having 2'-OH group which makes it more reactive and structurally
unstable, whereas B is having 2'-H group which makes it less reactive and
structurally stable.
(c) A and B both have -OH groups which make it more reactive and structurally
stable.
(d) A and B both are having -OH groups which make it less reactive and
structurally stable.
(Term I, 2021-22)
5.2 The Search for Genetic Material
MCQ
4. Which of the following criteria must a molecule fulfil to act as a genetic
material?
(i) It should not be able to generate its replica.
(ii) It should chemically and structurally be stable.
(iii) It should not allow slow mutation.
(iv) It should be able to express itself in the form of Mendelian characters.
(a) (i) and (ii) (b) (ii) and (iii)
(c) (iii) and (iv) (d) (ii) and (iv)
(Term I, 2021-22)
5. Oswald Avery, Colin MacLeod and Maclyn McCarty used enzymes to purify
biochemicals such as proteins, DNA and RNA from the heat-killed S cells to see
which ones could transform live R cells into S cells in Griffith's experiment. They
observed that
(a) proteases and RNases affected transformation
(b) DNase inhibited transformation
(c) proteases and lipases affected transformation
(d) RNases inhibited transformation.
(Term I, 2021-22)
LA (5 marks)
6. Evaluate the suitability of DNA and RNA as genetic material and justify the
suitability of the one that is preferred as an ideal genetic material.
(2020-21)
5.4 Replication
MCQ
7. If Meselson and Stahl's experiment is continued for sixth generations in
bacteria, the ratio of heavy strands 15N/15N :Hybrid15N/14N light 14N/14N
containing DNA in the sixth generation would be
(a) 1:1:1 (b) 0:1:7
(c) 0:1:15 (d) 0:1:31.
(Term I, 2021-22)
8. Origin of replication of DNA in E. coli is shown below. Identify the labelled
parts (i), (ii), (iii) and (iv).
(a) (i)- Discontinuous synthesis, (ii)- Continuous synthesis (iii) 3' end (iv) 5' end
(b) (i)- Continuous synthesis, (ii)- Discontinuous synthesis (iii) 5' end (iv) 3' end
(c) (i)- Discontinuous synthesis, (ii)- Continuous synthesis (iii) 5' end (iv) 3' end
(d) (i)- Continuous synthesis, (ii)- Discontinuous synthesis (iii) 3' end (iv) 5' end
(Term I, 2021-22)
LA (5 marks)
9. Explain the mechanism of DNA replication as suggested by Watson and Crick.
(2020-21)
5.5 Transcription
MCQ
10. The promoter site and the terminator site for transcription are located at
(a) 3' (downstream) end and 5′ (upstream) end, respectively of the transcription
unit
(b) 5' (upstream) end and 3′ (downstream) end, respectively of the transcription
unit
(c) the 5' (upstream) end of the transcription unit
(d) the 3' (downstream) end of the transcription unit. (Term I, 2021-22)
11. Which of the following is correct about mature RNA in eukaryotes?
(a) Exons and introns do not appear in the mature RNA.
(b) Exons appear, but introns do not appear in the mature RNA.
(c) Introns appear, but exons do not appear in the mature RNA.
(d) Both exons and introns appear in the mature RNA.
(Term I, 2021-22)
12. Two important RNA processing events lead to specialised end sequences in
most human mRNAs:
(i) at the 5' end, and (ii) at the 3' end. At the 5' end the most distinctive
specialised end nucleotide, (iii) is added and a sequence of about 200 (iv) is
added to the 3' end.
(a) (i) initiator codon (ii) promotor (iii) terminator codon (iv) release factors
(b) (i) promotor (ii) elongation (iii) regulation (iv) termination
(c) (i) capping (ii) polyadenylation (iii) mGppp (iv) Poly A
(d) (i) repressor (ii) co-repressor (iii) operon (iv) release factors
(Term I, 2021-22)
13. Transcription unit is represented in the diagram given below.
Identify site (i), factor (ii) and enzyme (iii) responsible for carrying out the
process.
(a) (i) Promoter site, (ii) Rho factor (iii) RNA polymerase
(b) (i) Terminator site, (ii) Sigma factor (iii) RNA polymerase
(c) (i) Promoter site, (ii) Sigma factor (iii) RNA polymerase
(d) (i) Promoter site, (ii) Sigma factor (iii) DNA polymerase
(Term I, 2021-22)
14. Assertion: Primary transcripts in eukaryotes are non-functional.
Reason: Methyl guanosine triphosphate is attached to 5' end of hnRNA.
(a) Both assertion and reason are true, and reason is the correct explanation of
assertion.
(b) Both assertion and reason are true, but reason is not the correct explanation
of assertion.
(c) Assertion is true but reason is false.
(d) Both assertion and reason are false.
(2020-21)
LA (5 marks)
15. Observe the segment of mRNA given below.
(a) Explain and illustrate the steps involved to make fully processed hnRNA.
(b) Gene encoding RNA Polymerase I and III have been affected by mutation in a
cell. Explain its impact on the synthesis of polypeptide, stating reasons.
(2022-23)
5.6 Genetic Code
VSA (1 mark)
16. Predict the effect if, the codon UAU coding for an amino acid at the 25th
position of a polypeptide of 50 amino acids, is mutated to UAA.
(2020-21)
5.7 Translation
MCQ
17. AUG on the mRNA will result in the activation of which of the following RNA
having correct combination of amino acids?
(Term I, 2021-22)
18. Which cellular process is shown below?
(a) The active site of enzyme permease present in the cell membrane of a
bacterium has been blocked by an inhibitor, how will it affect the lac operon?
(b) The protein produced by the i gene has become abnormal due to unknown
reasons. Explain its impact on lactose metabolism stating the reason.
(c) If the nutrient medium for the bacteria contains only galactose; will operon be
expressed? Justify your answer.
(2022-23)
5.10 DNA Fingerprinting
MCQ
22. Short stretches of DNA used to identify complementary sequence in a sample
are called
(a) probes (b) markers
(c) VNTRS (d) primers.
(Term I, 2021-22)
23. What are minisatellites?
(a) 10-40 bp sized small sequences within the genes.
(b) Short coding repetitive region on the eukaryotic genome.
(c) Short non-coding repetitive sequence forming large portion of eukaryotic
genome.
(d) Regions of coding strands of the DNA.
(Term I, 2021-22)
24. There was a mix-up at the hospital after a fire accident in the nursery division.
Which of these children belong to the parents?
3. (c): Prokaryotes does not have a well-defined nucleus. DNA being a negatively
charged is held with some proteins (having positive charges) in the region
termed as 'nucleoid'. The DNA in nucleoid is organised as large loops held by
proteins.
4. Euchromatin is the transcriptionally active region of chromatin in a nucleus.
5. The negatively charged and positively charged components of a nucleosome
are DNA and histones respectively.
6. In prokaryotes, DNA lies in the cytoplasm which is supercoiled (coiled and
recoiled) with the help of RNAs and non-histone basic proteins like polyamines.
DNA being negatively charged is held in place with the help of these proteins that
have positive charges in a region termed as nucleoid. The DNA in nucleoid is
organised in large loops held by proteins.
7. DNA is wrapped around the positively charged histone octamer to form a
structure called nucleosome. DNA packing in eukaryotes is carried out with help
of lysine and arginine rich basic proteins called histones. The unit of compaction
is nucleosome. There are five types of histone proteins – H1, H2A, H2B, H3 and H4.
Four of them (H2A, H2B, H3 and H4) occur in pairs to produce histone octamer,
called nu-body or core of nucleosome. Their positively charged ends are towards
the outside. They attract negatively charged strands of DNA. DNA over nu-body
forms 1.75 left-handed turns to form nucleosome core. A typical nucleosome
contains 200 bp of DNA helix. DNA connecting two adjacent nucleosomes is
called interbead or linker DNA. It bears H₁ histone protein. Nucleosome chain
gives a beads-on-string appearance.
8. Central dogma refers to the flow of information from DNA to mRNA
(transcription) and then decoding the information present in mRNA in the
formation of polypeptide chain or protein (translation). It was proposed by Crick
in 1958.
9. DNA packaging in eukaryotes is carried out with the help of basic amino acids
residues lysine and arginine called histones. Histones are organised to form a unit
of eight molecules called histone octamer. The negatively charged DNA is
wrapped around the positively charged histone octamer to form nucleosome.
There are five types of histone proteins, i.e., H1, H2A, H2B, H3 and H4. Four of them
(H2A, H2B, H3 and H4,) occur in pairs to produce histone octamer or nu-body. A
typical nucleosome contains 200 bp of DNA helix. Nucleosomes constitute the
repeating unit of a structure in nucleus called chromatin (thread-like stained
bodies seen in nucleus). The nucleosomes in chromatin appears as 'beads-on-
string' under electron microscope (EM). The beads-on-string structure in
chromatin is packaged to form chromatin fibers that are further coiled and
condensed at metaphase stage of cell division to form chromosomes. In a typical
nucleus, some regions of chromatin are loosely packed (and stains light) and are
referred to as euchromatin. The chromatin that is more densely packed and
stains dark are called as heterochromatin. Euchromatin is said to be
transcriptionally active chromatin, whereas heterochromatin is inactive.
10. (a) According to Chargaff's rule,
[A] + [G] = [C] + [T]
Also, [A] = [T] and [C] = [G]
As [A] = [T], therefore [T] = 240
[A] + [T] = 240 + 240 = 480
As total number of nucleotides = 1000,
therefore [G] + [C] = 1000 - 480 = 520
[G] = [C]
520
therefore, [G] = [C] = =260
2
19. (a) Transformation is the phenomenon by which the DNA isolated from one
type of cell, when introduced (artificially or naturally) into another type, is able
to show some of the properties of the former to the latter. Griffith observed
transformation in Streptococcus pneumoniae (bacterium responsible for causing
pneumonia). He grew bacteria on a culture plate, some produced smooth shiny
colonies (S) while others produced rough colonies (R). Mice infected with the S
strain (virulent) die from pneumonia infection but mice infected with the R strain
do not develop pneumonia.
S strain→ Injected into mice → Mice die
R strain → Injected into mice → Mice live
Griffith observed that heat-killed S strain bacteria, when injected into the mice,
did not kill them.
S strain (heat-killed) → Inject into mice → Mice live
When he injected a mixture of heat-killed S strain and live R bacteria, the mice
died. Moreover, he recovered living S strain bacteria from the dead mice.
S strain (heat-killed) + R strain (live) → Injected into mice → Mice die
(b) In the above experiment performed by Griffith, heat killed S type of bacteria,
but did not destroy the properties of genetic material as R strain bacteria had
somehow been transformed to produce a smooth polysaccharide coat and
become virulent.
20. (a) Francis Crick (1958) proposed 'Central dogma' in molecular biology
which states that the flow of information first occurs from DNA to mRNA by the
process of transcription and then the information present in mRNA is decoded
for the formation of polypeptide chain by the process of translation. The central
dogma suggests that DNA contains the information needed to make all of our
proteins, and that RNA is a messenger that carries this information to ribosomes.
The ribosomes serve as factories in the cell where the information is translated
from a code into the functional product.
Yes, central dogma differs in retroviruses, e.g., HIV, etc., where it is called central
dogma reverse (inverse flow of information) i.e., from RNA to DNA. RNA of these
viruses first synthesises DNA through reverse transcription and DNA then
transfers information to RNA which takes part in translation of coded
information to form a polypeptide.
(b) In 1928, Frederick Griffith performed the transformation experiment using
Streptococcus pneumoniae. When he injected heat killed, virulent S strain along
with non-virulent, live R strain in mice, then the mice died. It showed that
something from dead S strain transformed the non-virulent R strain into virulent
one. During the course of his experiment, a living organism (bacteria) had
changed in physical form. This phenomenon was called transformation by him.
He concluded that the R strain bacteria had somehow been transformed by the
heat-killed S strain bacteria. Some 'transforming principle', transferred from the
heat-killed S strain, had enabled the R strain to synthesise a smooth
polysaccharide coat and become virulent. This must be due to the transfer of the
genetic material. However, the biochemical nature of genetic material was not
defined from his experiments. Now, Avery, MacLeod and McCarty worked to
determine the biochemical nature of transforming principle in Griffith's
experiment. They later purified biochemicals (proteins, DNA, RNA, etc.) from the
heat-killed S cells to see which ones could transform live R cells into S cells. They
discovered that DNA alone from S bacteria caused R bacteria to become
transformed. They also discovered that protein-digesting enzymes (proteases)
and RNA-digesting enzymes (RNases) did not affect transformation. Digestion
with DNase did inhibit transformation, suggesting that the DNA caused the
transformation and they concluded that DNA is the hereditary material.
21. A molecule that can act as genetic material must fulfill the following criteria:
(a) It should be able to generate its replica.
(b) It should be chemically and structurally stable.
(c) It should provide the scope for slow changes that are required for evolution.
(d) It should be able to express itself in the form of 'Mendelian characters!
The criteria which make DNA a better genetic material than RNA are as follows:
(i) DNA is chemically less reactive and structurally more stable than RNA as its
nucleotides is not exposed except when they are to express their effect, whereas
2'-OH group in ribose sugar of every nucleotide of RNA makes it more reactive.
RNA also functions as an enzyme and is therefore more reactive and unstable.
(ii) Presence of thymine in DNA instead of uracil in RNA provides stability to
DNA.
(iii) Hydrogen bonding between purines and pyrimidines and their stacking
make DNA more stable for storage of genetic information than RNA.
(iv) DNA has power of repairing and there is no such repairing mechanism in
RNA.
22. (a) Hershey and Chase worked with virus T2 bacteriophage. T2 bacteriophage
is a bacterial virus which has ability to infect Escherichia coli and it possess linear
double stranded DNA (deoxyribose nucleic acid) as genetic material, therefore
they used this bacteriophage or virus for their work.
(b) Hershey and Chase used to follow two types of culture media:
(i) Medium that contained radioactive phosphorus (32P).
(ii) Medium that contained radioactive sulphur (35S).
They used two different kinds of culture media to detect whether the genetic
material is DNA or protein. Viruses grown in the presence of radioactive
phosphorus contained radioactive DNA but not radioactive protein because DNA
contains phosphorus but protein does not. Similarly, viruses grown on
radioactive sulphur contained radioactive protein but not radioactive DNA
because DNA does not contain sulphur.
(c) Blender was used in experiment to remove the empty phage capsids (or
ghosts) sticking to the surface of bacteria. Centrifuge was used to separate virus
particle from the bacteria. The bacterial cultures were centrifuged. Both the
supernatant and the pellets were checked for radioactivity. In culture with
radioactive 35S it was found that phage with labelled protein did not make
bacteria labelled. Instead, radioactivity was restricted to supernatant which was
found to contain only capsid. On the other hand, in the second culture with 32P it
was found that supernatant containing capsid was not radioactive instead
bacteria become labelled proving that only DNA of the phage entered the
bacteria.
(d) Hershey and Chase from this experiment concluded that genetic material is
DNA and not the protein.
23. (a) Transformation is the phenomenon by which the DNA isolated from one
type of cell, when introduced (artificially or naturally) into another type, is able
to show some of the properties of the former to the latter.
Griffith observed transformation in Streptococcus pneumoniae (bacterium
responsible for causing pneumonia). He grew bacteria on a culture plate, some
produced smooth shiny colonies (S) while others produced rough colonies (R).
Mice infected with the S strain (virulent) die from pneumonia infection but mice
infected with the R strain do not develop pneumonia.
S strain → Injected into mice → Mice die
R strain→ Injected into mice → Mice live
Griffith observed that heat-killed S strain bacteria, when injected into the mice,
did not kill them.
S strain (heat-killed) → Inject into mice → Mice live
When he injected a mixture of heat-killed S strain and live R bacteria, the mice
died. Moreover, he recovered living S strain bacteria from the dead mice.
S strain (heat - killed) + R strain (live) → Injected into mice → Mice die
From the experiment, Griffith concluded that the R strain bacteria had been
transformed by the heat-killed S strain bacteria as some 'transforming principle'
transferred from heat killed S strain enabled the R strain to become virulent.
(b) Avery, MacLeod and McCarty (1944) performed the biochemical
characterisation of the 'transforming principle' of Griffith's experiment. They
separated the extract of smooth, virulent bacteria into protein, DNA and
carbohydrate fractions. Each fraction was separately added to a culture medium
containing live rough bacteria. Only the culture that received the DNA fraction of
the extract from virulent bacteria produced smooth bacteria.
This proved that DNA was the transforming agent. When DNA fraction was
treated with deoxyribonuclease (an enzyme that digests DNA), it became inactive
and incapable of transforming the rough strain into the smooth strain. This
confirmed that DNA is the genetic material.
The following table represent the result of Avery's experiment.
24. Refer to answer 18.
25. Refer to answer 23.
26. Alfred D. Hershey and Martha Chase, choose T2 bacteriophage as their
experimental material. They decided to see which of the bacteriophage
components-protein or DNA-entered bacterial cells and directed reproduction of
the virus. Hershey and Chase experiment is based on the fact that DNA but not
the protein contains phosphorus, and similarly sulphur is present in proteins
(cysteine and methionine) but not in DNA. They incorporated radioactive isotope
of phosphorus (32P) into phage DNA and that of sulphur (35S) into proteins of
separate phage cultures. These phage types were used independently to infect
the bacterium Escherichia coli. After sometime, the cultures were agitated in a
blender to separate the empty phage capsids from the surface of bacterial cells
and the two were separated by centrifugation. Hershey and Chase showed that in
bacterial cells, infected with virus containing radioactive phosphorus ( 32P),
radioactivity was associated with bacterial cells and also, appeared in the
progeny phage. However, in bacterial culture where radioactive sulphur (35S)
was used, all radioactive material was limited to phage 'ghosts' (empty viral
protein coats). These results indicated that the DNA of the bacteriophage and not
the protein enters the host, where viral replication takes place. Therefore, DNA is
the genetic material of T2 bacteriophage. It directs protein coat synthesis and
allows replication to occur.
Diagrammatic representation of Hershey and Chase experiment is as follows:
27. Refer to answer 23 (a).
28. (c)
29. (a): Avery, Macleod and McCarty discovered that protease and RNases did not
affect transformation but digestion with DNase did inhibit transformation.
Lipases are involved in digestion of lipids, thus it will not affect transformation.
30. (c): Meselson and Stahl carried out centrifugation in CsCl2 density gradient to
separate the normal DNA from 15N-DNA.
31. Deoxyribonucleoside triphosphates such as dATP, dCTP, dGTP and dTTP serve
dual purpose during DNA replication. They act as substrates i.e., nucleotides for
the replication process as well as provide energy for the polymerisation of
nucleotides by cleavage of high energy terminal phosphate bonds.
32. The sources of energy for the replication of DNA are phosphorylated
nucleotides or deoxyribonucleoside triphosphates i.e., dATP, dCTP, dGTP and
dTTP.
33. It is not possible for an alien DNA to become a part of the chromosome
anywhere along the length and replicate normally because of absence of origin of
replication (ori). It is the sequence where DNA replication starts. This site is also
necessary for binding of DNA polymerase to start DNA replication. As this site
may not present in all alien DNA molecules, hence they cannot replicate normally.
34. DNA replication doubles the amount of DNA in a cell and cell division again
halves the amount of DNA i.e., maintains the normal amount of DNA in the
daughter nuclei. Thus, if DNA replication is not followed by cell division in a
eukaryotic cell, then amount of DNA will increase than normal, resulting in
abnormal conditions such as polyploidy.
35. DNA ligase is an enzyme that catalyses the repair of a single strand break by
formation of covalent phosphodiester bond between adjacent 3′ hydroxyl and 5'
phosphoryl groups in double stranded DNA. During replication of DNA, short
replicated fragments/ segments of DNA or Okazaki fragments are present on the
lagging strand. These fragments are joined to form a continuous strand with the
help of enzyme DNA ligase.
36. Diagrammatic representation of DNA replication is as follows:
37. The work of Matthew Meselson and Franklin Stahl (1958) on E. coli proved
semi-conservative replication of DNA. They first grew bacteria Escherichia coli in
a medium containing heavy isotope 15N for several generations. This led to the
incorporation of heavy isotope in all nitrogen-containing compounds including
bases. They were able to extract the bacterial DNA and centrifuge it in cesium
chloride solution. Depending on the mass of the molecule, the DNA would settle
out at a particular point in the tube. The 15N bacteria were then transferred to a
growth medium containing the normal, lighter isotope of nitrogen, 14N, where
they reproduced by cell division.
Meselson and Stahl found that DNA of the first generation was hybrid or
intermediate (15N and 14N). It settled in cesium chloride solution at a level higher
than the fully labelled DNA of parent bacteria (15N15N). The second generation of
bacteria after 40 minutes, contained two types of DNA, 50% light (14N14N) and
50% intermediate (15N14N).
At succeeding generation times, the DNA extracts were found to have a lower
proportion of 15N as more 14N was incorporated into the bacterial DNA. This
observation is possible only if both strands separate during replication and one
strand act as template for synthesis of new strand of DNA having 14N. This was
conclusive evidence for the semi-conservative method of DNA replication.
38. Diagrammatic representation of replicating fork is as follows:
The figure represents the mechanism of DNA replication, during which leading
strand and lagging strand are formed on the two different template strands. DNA-
polymerase can polymerise nucleotides only in 5'→ 3' direction. Since the two
strands of DNA run in antiparallel directions, the two templates provide different
ends for replication.
Replication, over the two templates, thus proceeds in opposite directions. One
strand with polarity 3′ → 5′ replication is continuous because 3' end of the latter
is always open for elongation. It is called leading strand.
Replication is discontinuous on the other template with polarity 5' 3' because
only a short segment of DNA strand can be built in 5'→ 3' direction due to
exposure of a small stretch of template at one time. Short segments of replicated
DNA are called Okazaki fragments. Okazaki fragments are later joined together by
means of enzyme, DNA ligase to form lagging strand.
DNA ligase is an enzyme that catalyses the repair of a single strand break by
formation of covalent phosphodiester bond between adjacent 3′ hydroxyl and 5'
phosphoryl groups in double stranded DNA.
During replication of DNA, short replicated fragments/segments of DNA or
Okazaki fragments are present on the lagging strand. These fragments are joined
to form a continuous strand with the help of enzyme DNA ligase.
39. (a) NH4Cl (Ammonium chloride) was used as a source of nitrogen by
Meselson and Stahl in their experiment.
(b) They synthesised light and heavy DNA molecules in the organism (E. coli
bacterium) so as to separate different generations on the basis of density
gradient centrifugation.
(c) The DNA molecules from each generation, were tested through density
gradient centrifugation using cesium chloride. The heavy DNA molecules settled
at the bottom whereas successively light DNA molecules settled at the surface. In
this way, the DNA molecules were distinguished.
(d) From the experiment scientists concluded that DNA replication is semi-
conservative in nature.
40. (a) The two strands of DNA cannot be separated in its entire length for long
DNA molecules due to very high energy requirement, the replication occur within
a small opening of the DNA helix known as replication fork.
(b) The DNA-dependent DNA polymerases catalyse polymerisation only in 5'-3'
due to which some additional complications are created at the replicating fork.
On one strand, the replication is continuous on the template with polarity 3' 5',
while on the other, the replication is discontinuous on the template with polarity
5'-3'. The short stretches of DNA, each primed by RNA are called Okazaki
fragments.
41. The work of Matthew Meselson and Franklin Stahl (1958) on E. coli proved
semi-conservative replication of DNA. They first grew bacteria Escherichia coli in
a medium containing heavy isotope 15N for several generations. This led to the
incorporation of heavy isotope in all nitrogen-containing compounds including
bases. They were able to extract the bacterial DNA and centrifuge it in cesium
chloride solution. Depending on the mass of the molecule, the DNA would settle
out at a particular point in the tube. The 15N bacteria were then transferred to a
growth medium containing the normal, lighter isotope of nitrogen, 14N, where
they reproduced by cell division. Meselson and Stahl found that DNA of the first
generation was hybrid or intermediate (15N and 14N). It settled in cesium chloride
solution at a level higher than the fully labelled DNA of parent bacteria (15N15N).
The second generation of bacteria after 40 minutes, contained two types of DNA,
50% light (14N14N) and 50% intermediate (15N14N). At succeeding generation
times, the DNA extracts were found to have a lower proportion of 15N as more 14N
was incorporated into the bacterial DNA. This observation is possible only if both
strands separate during replication and one strand act as template for synthesis
of new strand of DNA having 14N. This was conclusive evidence for the semi-
conservative method of DNA replication.
42. (i): Replication fork in a prokaryote indicating the process of DNA replication
is as follows:
(ii) DNA is made differently on the two strands at a replication fork. One new
strand, the leading strand, runs 5' to 3' towards the fork and is made
continuously. The other, the lagging strand, runs 5' to 3' away from the fork and is
made in small pieces called Okazaki fragments.
(iii) Enzymes involved in the process of DNA replication are: DNA polymerase,
DNA ligase, helicase, topoisomerase, phosphorylase and primase.
(iv) In Vicia faba, the semi-conservative mode of replication of DNA was
experimentally proved.
43. (a) DNA replication occurs during S-phase of the cell cycle.
(b) DNA replication is a multistep complex process, which requires a dozen
enzymes and protein factors. It begins at a particular spot called origin of
replication or ori.
Separating the two strands of DNA is accomplished by the helicase enzymes that
travel along the helix, opening the double helix as they move. Unwinding also
creates a coiling tension in front of the moving replication fork, a structure that
will be formed when DNA replication begins. This tension is reduced by
topoisomerases.
The very important DNA synthesising enzyme is DNA polymerase III. It along
with other DNA polymerases (I and II) has the ability to elongate an existing DNA
strand but cannot initiate the synthesis.
All the three DNA polymerases function in 5' → 3' direction only for DNA
polymerisation and have 3' → 5' exonuclease activity.
To initiate DNA synthesis, a small segment of RNA (10 to 60 nucleotides) called
an RNA primer complementary to the template DNA is synthesised by a unique
RNA polymerase known as primase.
While on the one strand the DNA synthesis is continuous in 5' 3’ direction, on the
other strand, DNA is synthesised in small stretches resulting in discontinuous
DNA synthesis. This happens in the opposite direction to the first strand but
maintains the overall 5' → 3' direction as required. Such a process is also referred
to as semi-discontinuous replication. The short stretches of DNA, each primed by
RNA are called Okazaki fragments.
RNA primer is then removed, and the gap is filled by DNA polymerase. The
enzyme ligase then seals these fragments.
The strand which supports the continuous DNA synthesis is the leading strand
and the one, which is replicated in short stretches is called the lagging strand.
(c) DNA replication is said to be semi-conservative since daughter DNA duplex
comprise of one parental and one newly synthesised strand.
44. The work of Matthew Meselson and Franklin Stahl (1958) on E.coli proved
semi-conservative replication of DNA. They first grew Escherichia coli bacteria in
a medium containing heavy isotope of nitrogen (15N) for several generations.
This led to the incorporation of heavy isotope in all nitrogen-containing
compounds including bases. They were able to extract the bacterial DNA and
centrifuge it in cesium chloride solution. Depending on the mass of the molecule,
the DNA would settle out at a particular point in the tube (heavy DNA molecule
can be distinguished from normal DNA by centrifugation in cesium chloride
density gradient).
The 15N bacteria were then transferred to a growth medium containing the
normal, lighter isotope of nitrogen, 14N, where they reproduced by cell division.
Extracts of DNA from the first-generation offspring were shown to have a lower
density, since half the DNA was made up of the original strand containing 15N and
the other half was made up of the new strand containing 14N. At succeeding
generation times, the DNA extracts were found to have a lower proportion of 15N
as more 14N was incorporated into the bacterial DNA. This was conclusive
evidence for the semi-conservative method of DNA replication.
The conclusion they arrived at after the experiment is that the DNA replication is
semi-conservative. Semiconservative means that when the double stranded DNA
helix was replicated, each of the two double stranded DNA helices of newly
synthesised strands consisted of one strand coming from the original helix and
one newly synthesised. So, in this way at each replication, one strand of parent
DNA is conserved in the daughter while the second is freshly synthesised.
45. (a) Diagrammatic representation of replicating fork is as follows:
Due to high energy requirement whole of DNA does not open in one stretch. The
point of separation proceeds slowly towards both directions. It gives the
appearance of Y-shaped structure called replication fork.
(b) Two enzymes involved in the process of DNA replication are:
(i) Helicase - causes the unwinding of DNA strand.
(ii) Topoisomerase - releases the tension of DNA strand.
46. DNA replication occurs during S-phase of cell cycle. It is a multistep complex
process which requires over a dozen enzymes and protein factors. It begins at a
particular spot called origin of replication or Ori. Replication of DNA is
energetically highly expensive. The main enzyme of DNA replication is DNA
dependent DNA polymerase.
Deoxyribonucleoside monophosphates occur freely inside the nucleoplasm. They
are first phosphorylated and changed to active forms. The phosphorylated
nucleotides are dATP (deoxyadenosine triphosphate), dGTP (deoxyguanosine
triphosphate), dCTP (deoxycytidine triphosphate) and dTTP (deoxythymidine
triphosphate).
Enzyme helicase (unwindase) acts over the Ori site and unzips (unwinds) the
two strands of DNA by destroying hydrogen bonds. Unwinding creates tension in
the uncoiled part by forming more supercoils. Tension is released by enzymes
topoisomerases. With the help of various enzymes both the strands of DNA
become open for replication.
However, whole of DNA does not open in one stretch due to very high energy
requirement. The point of separation proceeds slowly towards both the
directions. In each direction, it gives the appearance of Y-shaped structure called
replication fork. RNA primer is a small strand of RNA which is synthesised at the
5' end of new DNA strand with the help of DNA specific RNA polymerase enzyme
called primase.
Prokaryotes have three major types of DNA synthesising enzymes called DNA
polymerases III, II and I. In eukaryotes five types of DNA polymerases are found -
α, B, y, 8 and ε, but the major three being a, 8 and ε. The two separated DNA
strands in the replication fork function as templates.
As replication proceeds, new areas of parent DNA duplex unwind and separate so
that replication proceeds rapidly from the place of origin towards the other end.
RNA primer is removed and the gap filled with complementary nucleotides by
means of DNA polymerase I. DNA polymerase can polymerise nucleotides only in
5' → 3' direction on 3' → 5′ strand because it adds them at the 3' end. Since the
two strands of DNA run in antiparallel directions, the two templates provide
different ends for replication. Replication over the two templates thus proceeds
in opposite directions. One strand with polarity 3'→ 5' forms its complementary
strand continuously because 3' end of the latter is always open for elongation. It
is called leading strand.
Replication is dicontinuous on the other template with polarity 5′→ 3' because
only a short segment of DNA strand can be built in 5' →→ 3' direction due to
exposure of a small stretch of template at one time. Short segments of replicated
DNA are called Okazaki fragments. Okazaki fragments are joined together by
means of enzyme, DNA ligase. DNA strand built up of Okazaki fragments is called
lagging strand.
47. (a) Refer to answer 46.
(b) In eukaryotes, the replication of DNA takes place during S-phase of the cell
cycle. The replication of DNA and cell division cycle should be highly coordinated.
A failure in cell division after DNA replication results into polyploidy (a
chromosomal anomaly).
48. (a): The sequence of bases on mRNA transcribed is same as coding strand
except, the base thymine is replaced by uracil, i.e., 5'-AUGCGGC-3'.
49. (b): Promoter is a DNA sequence that provides binding site for RNA
polymerase and initiates transcription.
50. (a): In transcription unit, the terminator is located towards 3'-end
(downstream) of the coding strand and it usually defines the end of the process
of transcription.
51. (d): In the given figure, exons are coding regions and introns are non-coding
regions. Introns are removed by cutting and joining of exons in a defined order by
splicing mechanism. Thus, there are 7 introns and 8 exons in the given
heterogenous RNA.
52. (c)
53. Cistron is a segment of DNA consisting of a stretch of base sequences that
codes for one polypeptide chain, one transfer RNA (tRNA), ribosomal RNA
(rRNA) molecule or performs any other specific function in connection with
transcription, including controlling the functioning of other cistrons.
54. In eukaryotes, RNA polymerase II transcribes precursor of mRNA, the
heterogeneous nuclear RNA (hnRNA).
55. RNA polymerase II
56. Exons are the segments in genes which contain coding nucleotide sequences.
These sequences are ultimately translated into polypeptide. Thus, exons carry
genetic information. Introns are the segments in genes which contain non-coding
nucleotide sequences. These do not form part of mRNA and are removed during
the processing of hnRNA (splicing).
57. (a) The complementary strand for the given strand of DNA segment is
5′ - ATGCATGCATGCATGC – 3
(b) In RNA, the thymine is replaced by uracil. So, the RNA strand transcribed from
the above molecule could be
5'-AUGCAUGCAUGCAUGC - 3'
58. The schematic diagram of a transcription unit is shown as follows:
59. Differences between template strand and coding strand are as follows:
(i) Promoter - The promoter is located towards 5'-end of the coding strand. It is a
DNA sequence that provides binding site for RNA polymerase, and it is the
presence of a promoter in a transcription unit that defines the template and
coding strands.
(ii) Structural gene - The structural genes code for the enzymes and proteins. It
transcribes the mRNA for the same.
(iii) Terminator - The terminator is located towards 3'-end of the coding strand
and it defines the end of the process of transcription.
65. (a) The transcriptional products of RNA polymerase III are tRNA, 5SrRNA and
snRNA.
(b) In capping, additional nucleotides (methyl guanosine triphosphate) are
added to the 5'-end of hnRNA. In tailing, adenylate residues (200 - 300) are
added at the 3′-end in a template independent manner.
(c) Heterogeneous nuclear RNA.
66. There are atleast three RNA polymerases in the nucleus (in addition to the
RNA polymerase found in the organelles) i.e., RNA polymerase I, RNA polymerase
II and RNA polymerase III.
(i) The RNA polymerase I is involved in transcription of rRNAs (28S, 18S, and
5.8S).
(ii) The RNA polymerase II is involved in transcription of the heterogeneous
nuclear RNA (hnRNA) which is the precursor of mRNA.
(iii) The RNA polymerase III is involved in transcription of tRNA, 5SrRNA, and
snRNAs (small nuclear RNAs).
67. In eukaryotic cells, the primary transcript is often larger than the functional
mRNA and is known as heterogeneous RNA or hnRNA. It undergoes modification
termed as post-transcriptional processing to become functional m-RNA. It has
four steps.
(i) Cleavage: Larger RNA precursors are cleaved to form smaller RNAs.
(ii) Splicing Eukaryotic transcripts possess extra segments called introns or
intervening sequences or non-coding sequences. They do not appear in mature or
processed RNA. The functional coding sequences are called exons. Splicing is
removal of introns and fusion of exons to form functional RNAs.
(iii) Terminal additions (capping and tailing): Additional nucleotides are added
to the ends of RNAs for specific functions, e.g., CCA segment in tRNA, cap
nucleotides at 5'-end of mRNA or poly-A segments (200-300 residues) at 3'-end
of mRNA. Cap is formed by modification of GTP into 7-methyl guanosine or 7-mG.
(iv) Nucleotide modifications : They are most common in tRNA-methylation (e.g.,
methyl cytosine, methyl guanosine), deamination (e.g., inosine from adenine),
dihydrouracil, pseudouracil, etc.
68. The comparison between processes of prokaryotic DNA replication and
transcription are as follows:
69. (a) Transcription is the process of copying genetic information from one
strands of DNA into RNA. A transcription unit of a DNA has three regions a
promoter, a structural gene and a terminator.
Bacterial structural gene in a transcription unit is polycistronic. Transcription
requires a DNA dependent RNA polymerase. Prokaryotes have only one DNA
dependent RNA polymerase which synthesises all types of RNA.
Three major types of RNAs in bacteria are mRNA (messenger RNA), tRNA
(transfer RNA), and rRNA (ribosomal RNA). All three RNAs are needed to
synthesise a protein in a cell. The mRNA provides the template, tRNA brings
amino acids and reads the genetic code, and rRNAs play structural and catalytic
role during translation. In bacteria/prokaryotes, transcription occurs in contact
with cytoplasm as their DNA lies in the cytoplasm.
RNA polymerase binds to promoter and initiates transcription (Initiation). It uses
nucleoside triphosphates as substrate and polymerises the mRNA strand in a
template depended fashion following the rule of complementarity. It also
facilitates opening of the helix and continues elongation. Only a short stretch of
RNA remains bound to the enzyme. Once the polymerases reaches the terminator
region, the nascent RNA falls off, so also the RNA polymerase. This results in
termination of transcription.
(b) Refer to answer 67.
70. Mechanism of transcription in prokaryotes:
In bacteria/prokaryotes, transcription occurs in contact with cytoplasm as their
DNA lies in the cytoplasm.
(i) Activation of ribonucleotides - The four types of ribonucleotides are
adenosine monophosphate (AMP), guanosine monophosphate (GMP), uridine
monophosphate (UMP) and cytidine monophosphate (CMP). They occur freely in
the nucleoplasm. Prior to transcription the nucleotides are activated through
phosphorylation. Enzyme phosphorylase is required along with energy. The
activated or phosphorylated ribonucleotides are adenosine triphosphate (ATP),
guanosine triphosphate (GTP), uridine triphosphate (UTP) and cytidine
triphosphate (CTP).
(ii) Binding of RNA polymerase to DNA duplex - On a signal from the cytoplasm,
DNA segment become ready to transcribe. The RNA polymerase enzyme binds to
a specific site, called promoter, in the DNA double helix. Prokaryotes have only
one RNA polymerase that synthesise all types of RNA. The promoter also
determines which DNA strand is to be transcribed. Thus, a promotor region has
RNA polymerase recognition site and RNA polymerase binding site.
(iii) Base pairing-Ribonucleoside triphosphates present in the surrounding
medium come to lie opposite the nitrogen bases of the DNA template (anti-sense
strand). They form complementary pairs; U opposite A, A opposite T, C opposite G
and G opposite C. A pyrophosphate is released from each ribonucleoside
triphosphate to produce ribonucleotide.
(iv) Formation of RNA chain - With the help of RNA polymerase the adjacent
ribonucleotides held over DNA template join to form RNA chain. A single RNA
polymerase recognise promoter and initiation region in prokaryotes. As the RNA
chain formation initiates, the sigma (α) factor of the RNA polymerase separates.
RNA polymerase (core enzyme) moves along the DNA template causing
elongation of RNA chain at the rate of some 30 nucleotides per second. RNA
synthesis stops as soon as polymerase reaches the terminator region. Rho factor
(ρ) has ATPase activity and also possesses 4-8 adenine ribonucleotides.
(v) Separation of RNA chain - With the help of rho factor, the fully formed RNA
chain is now released. One gene forms several molecules of RNA, which are
released from the DNA template one after the other on completion. The released
RNA is called primary transcript.
(vi) Duplex formation - As the RNA chain is released, the transcribed region of
the DNA molecule gets hydrogen bonded to the sense strand and the two are
spirally coiled to assume the original double helical form. The protective protein
coat is added again to the DNA duplex. Gyrases, helicases and helix stabilizing
proteins are released.
Differences between prokaryotic and eukaryotic transcription are:
71. In eukaryotes, transcription occurs throughout I-phase in differentiated cells
but more so in G₁ and G₂ phases of cell cycle inside the nucleus. Depending upon
the requirement, a structural gene may transcribe one to numerous RNA
molecules. The transcription products move out into cytoplasm for translation.
Transcription requires a DNA dependent RNA polymerase. Eukaryotes have three
RNA polymerase, Pol I (Pol A) (for ribosomal or rRNAs except 5S rRNA). Pol II
(for mRNA, hnRNAs) and Pol III (for transfer or tRNA, 5S rRNA., and some
snRNAs). Eukaryotic RNA polymerases also require transcription factors for
initiation.
Prior to transcription, the nucleotides are activated through phosphorylation.
Enzyme phosphorylase is required along with energy. Each DNA transcription
segment has a promoter region, initiation site, coding region and a terminator
region. RNA polymerase (common in prokaryotes and specific in eukaryotes)
binds itself to the promoter region. The two strands of DNA uncoil progressively
from the site of polymerase binding. One of the two strands of DNA (3'→ 5')
functions as a template for transcription of RNA. Transcript formation occurs in
5' → 3' direction.
Ribonucleoside triphosphate present in the surrounding medium form
complementary pairs. With the help of RNA polymerase, the adjacent
ribonucleotides held over DNA template join to form RNA chain. In eukaryotes,
there are separate transcription factor and RNA polymerase for activation of
transcription. RNA polymerase (core enzyme) moves along the DNA template
causing elongation of RNA chain at the rate of some 30 nucleotides per second.
RNA synthesis stops as soon as polymerase reaches the terminator region. In
eukaryotes, the transcription unit yields a monocistronic mRNA. Diagrammatic
representation of transcription in eukaryotes is as follows:
80. (i) Stop codon : Codons that do not code for any amino acids and signal
polypeptide chain termination. E.g., UAA, UAG, UGA.
(ii) Unambiguous codon : Codons that specify only one amino acid and not any
other. E.g., AUG codes for methionine.
(iii) Degenerate codon : More than one codons codes for a single amino acid. In
degenerate codons, generally the first two nitrogen bases are similar while the
third one is different. E.g., UUU and UUC codes for phenylalanine.
(iv) Universal codon: A codon that is applicable universally i.e., specifies the same
amino acid from a virus to a tree or human being.
81. (a) George Gamow suggested that the genetic code should be made up of
three nucleotides.
(b) He proposed that since there are only 4 bases and if they have to code for 20
amino acids, the code should constitute a combination of bases made up of three
nucleotides. Combination of 43 (4 x 4 x 4) would generate 64 codons; generating
many more codons than required.
82. Exceptions to the universality of genetic code are:
(i) UAA and UGA are termination codons and do not code for any amino acid. But
in Paramecium and some other ciliates, these codons code for glutamine.
(ii) Genetic code is non-overlapping in most organisms. But, Φ × 174 has 5375
nucleotides that code for 10 proteins which require more than 6000 bases. Three
of its genes E, B and K overlap other genes. Nucleotide sequence at the beginning
of E gene is contained within gene D. Likewise gene K overlaps with genes A and
C. A similar condition is found in SV-40.
More than one codons code for a single amino acid, thus are called degenerate
codons. In degenerate codes, the first two nitrogen bases are similar while the
third one is different, e.g., UUU and UUC are the degenerate codes that code for
amino acid phenylalanine.
83. (a) Crick postulated the presence of tRNA as an adapter molecule.
(b) Following is the clover leaf model of tRNA.
99. In lac operon, the regulatory gene is called i gene because it produces an
inhibitor or repressor. Inducer for the lac operon is lactose. Its role is to bind with
repressor, change the latter into non-DNA binding state so as to free the operator
gene and switch on lac operon. The products of gene z and y of the lac operon are
β-galactosidase and premease respectively. β-galactosidase brings about
hydrolysis of lactose to form glucose and galactose. Galactoside permease is
required for entry of lactose into the bacterium. The a gene encodes a
transcetylase.
Schematic diagram of lac operon in ‘switched on’ position is as follows:
The operon gets switched ‘off’ in the absence of lactose (inducer). The repressor
molecule binds with the operator region of the operon and prevents RNA
polymerase from transcribing the operon.
100. (a) The given schematic representation is of lac operon. In lac operon, the
regulatory gene is called i-gene because it produces an inhibitor or repressor. The
repressor binds to operator gene and stops the operator from working. In the
absence of an inducer (i.e., lactose), the repressor binds to the operator gene
making it non-functional. RNA polymerase enzyme cannot move over it to reach
the structural genes. Thus, structural genes are inactivated and transcription
cannot take place.
(b) As regulatory gene exerts a negative control over the working of structural
genes, therefore regulation of lac operon is called negative regulation.
(c) 'Inducer' for the given operon is 'lactose. Its role is to bind with repressor,
change the latter into non-DNA binding state so as to free the operator gene and
switch on the lac operon. The products of the genes 'z' and 'y' of the lac operon
are β-galactosidase and premease respectively. β-galactosidase brings about
hydrolysis of lactose to form glucose and galactose. Galactoside permease is
required for entry of lactose into the bacterium.
101. Refer to Answer 98.
102. Lactose is the substrate for the enzyme beta-galactosidase and it regulates
switching on and off of the operon. Hence, it acts as an inducer in lac operon. If
lactose is provided in the growth medium of the bacteria, the lactose is
transported into the cells through the action of permease and induces the operon.
In the presence of an inducer (lactose), repressor is inactivated by interaction
with the inducer. This allows RNA polymerase access to the promoter and
transcription proceeds. The operon gets switched 'off' in the absence of lactose as
the repressor molecule binds with the operator region of the operon and
prevents RNA polymerase from transcribing the operon.
Diagrammatic representation of lac operon is as follows:
103. Schematic diagram of lac operon in ‘switched on’ position is as follows:
The operon gets switched ‘off’ in the absence of lactose (inducer). The repressor
molecule binds with the operator region of the operon and prevents RNA
polymerase from transcribing the operon.
104. (d): Y-chromosome possesses least number of genes.
105. Single nucleotide polymorphism (SNPs or snips) help in finding
chromosomal locations for disease associated sequences and tracing human
history.
106. Some of the salient observations drawn from human genome project are as
follows:
(i) The human genome consists of 3164.7 million bp.
(ii) The average gene consists of 3000 bases, though sizes vary greatly, with the
largest known human gene dystrophin having 2.4 million bases.
(iii) Proteins are coded by less than 2 per cent of the genome.
(iv) Scientists have identified about 1.4 million locations where single base DNA
differences called SNPs - single nucleotide polymorphism occur in humans. These
locations would help to identify chromosomal locations for disease associated
sequences and tracing human history.
107. (a) Chromosome 1 has most genes (2968).
(b) Chromosome Y has fewest (231).
108. (a) Four prime goals of the human genome project are as follows:
(i) The determination of the sequences of base pairs of human DNA.
(ii) The identification of all the genes (approximately 20,000-25,000) in human
DNA.
(iiii) Storage of the genetic information in databases.
(iv) Improvement in tools for data analysis.
(b) Drosophila melanogaster is a common non-human model organism which has
been sequenced after human genome.
109. 'SNP's, stands for single nucleotide polymorphism. About 1.4 million single
base DNA differences or SNPs have been identified in humans. SNPs occur
normally throughout a person's DNA almost once in every 1000 nucleotides on
average.
Their number may be more than 10 million. They are helpful in finding
chromosomal locations with disease associated sequences and tracing human
history.
110. (a) The two methodologies involved in human genome project (HGP) are:
(i) Expressed sequence tags or ESTs, i.e., identification of all the genes that are
expressed as RNA and sequencing the same.
(ii) Sequence annotation, i.e., sequencing whole set of genome and then assigning
the functions to different regions.
HGP followed the second methodology which involves the following steps:
(i) The whole DNA of the cell is isolated and broken randomly into fragments.
(ii) They are inserted into specialised vectors like BAC (bacterial artificial
chromosomes) and YAC (yeast artificial chromosome).
(iii) The fragments are cloned in suitable hosts like bacteria and yeast. PCR
(polymerase chain reaction) can also be used for cloning or making copies of
DNA fragments.
(iv) The fragments are sequenced as annotated DNA sequences.
(v) The sequences were then arranged on the basis of some overlapping regions.
It necessitated the generation of overlapping fragments for sequencing.
(vi) Computer based programmes were used to align the sequences.
(vii) The sequences were then annotated and assigned to different chromosomes.
All the human chromosomes have been sequenced, 22 autosomes, X and Y.
(viii) With the help of polymorphism in microsatellites and restriction
endonuclease recognition sites, the genetic and physical maps of the genome
have also been prepared.
(b) YAC is a vector and is expanded as yeast artificial chromosome. This vector is
used to clone DNA fragments of more than 1 Mb in size; therefore, they have been
exploited extensively in mapping the large genome i.e., human genome project.
They also contain restriction enzyme sites and genes which act as selectable
markers in yeast.
111. (a) In human genome project, 'Y' stands for yeast in YAC (yeast artificial
chromosomes) and 'B' stands for bacterial in BAC (bacterial artificial
chromosomes). These are specialised vectors used during sequencing in human
genome project.
(b) In human genome, less than 2 percent of the genome codes for proteins and
functions of only 50% of discovered genes are known.
(c) Human genome has SNPs at 1.4 million locations. Expanded form of SNPs is
Single Nucleotide Polymorphism.
112. (a) Four major goals of human genome project is:
(i) Identification of all the approximately 20,000-25,000 genes in human DNA.
(ii) To determine the sequences of the 3 billion chemical base pairs that make up
human DNA.
(iii) To store this information in databases.
(iv) To improve tools for data analysis.
(b) Four ways in which knowledge of HGP is of significant for humans are:
(i) SNPs will be helpful in finding chromosomal locations with disease associated
sequences and tracing human history.
(ii) Satellite DNA viz., minisatellite sequences called VNTRs are used in DNA
fingerprinting.
(iii) Repetitive sequences called junk DNA provide information about
chromosome structure, dynamics and evolution.
(iv) It will be possible to study how various genes and proteins work together.
(c) BAC Bacterial Artificial Chromosome. BAC is the vector into which DNA
fragments are inserted to form rDNA (recombinant DNA) using recombinant DNA
technology and are then multiplied in suitable host.
113. (d)
114. (c): In DNA fingerprinting, DNA is detected using Southern blotting where
the separated DNA sequences are transferred from gel onto a nitrocellulose or
nylon membrane.
115. Repetitive/satellite DNA can be separated from bulk genomic DNA by using
density gradient centrifugation.
116. DNA polymorphism in a population arise due to mutations.
117. DNA fingerprinting helps in determining the paternity from a small sample
of tissue or a drop of blood. DNA fingerprinting is a technique for identifying
individuals, generally using repeated sequences in the human genome that
produce a pattern of bands which is unique for every individual. Important for
DNA fingerprinting are short nucleotide repeats that vary in number from person
to person, but are inherited. These are the Variable Number of Tandem Repeats
or VNTRs. The VNTRs of two persons may be of the same length and sequence at
certain sites, but vary at others. DNA fingerprints can be prepared from
extremely minute amounts of blood, semen, hair bulb or any other cells of the
body.
118. (a) VNTR stands for Variable Number of Tandem Repeats that are short
nucleotide repeats in DNA which are specific to each individual and vary in
number from person to person but are inherited. The number of repeats in
VNTRs are important for DNA fingerprinting technique and are also referred as
"minisatellites". Each individual inherits these repeats from his/her parents
which are used as genetic markers in a personal identity test. As a result, the size
of VNTR varies from 0.1 to 20 kb. Consequently, after hybridisation with VNTR
probe, the autoradiogram gives many bands of differing sizes. These bands give
characteristic pattern for an individual DNA which is used to identify individuals.
(b) Applications of DNA fingerprinting are as follows:
(i) Paternity or maternity disputes can be solved by DNA fingerprinting as it can
identify the real genetic mother, father and the offspring.
(ii) This technique is being used to identify genes connected with hereditary
diseases.
(iii) It is useful in detection of crime and legal pursuits.
(iv) It can identify racial groups, their origin, historical migrations and invasions.
(Any two)
119. DNA fingerprinting technology can help to identify the dead individuals. It is
a technique of determining nucleotide sequences of certain portion of DNA which
are unique to each individual. DNA fingerprints can be prepared from extremely
minute amounts of blood, semen, hair bulb or certain other cells of the body. The
major steps are as follows:
(i) DNA is extracted from the cells. It is cut into fragments with restriction
enzymes. The fragments of DNA also contain VNTRS (Variable Number Tandem
Repeats) which vary in number from person to person.
(ii) DNA fragments are passed through gel electrophoresis. Fragments of
particular size having VNTRs are multiplied using PCR. Alkaline chemical is used
to split dsDNA to ssDNA.
(iii) Separated DNA sequences are transferred from gel onto a nitrocellulose or
nylon membrane.
(iv) Radioactive DNA probes complementary to VNTRS are poured over the nylon
membrane. Some of them bind with VNTRS (Southern Blotting).
(v) X-ray film is exposed to the nylon sheet which gives dark bands at the probe
sites. Thus, hybridised fragments are detected by autoradiography. The dark
bands on X-ray film represent the DNA fingerprints (DNA profiles).
120. Satellite DNA are short, non-coding sequences of DNA. Satellite DNA are very
specific in each individual, vary in number from person to person and are
inherited. They do not code for any protein. They form large part of human
genome. These sequences show high degree of polymorphism. Each individual
inherits the satellite DNA from, his/her parents which are used as genetic
markers in DNA fingerprinting.
121. The DNA fingerprinting technique is widely used in forensic that serves as
the basis of paternity testing in case of disputes.
The major steps involved in DNA fingerprinting are as follows:
(i) DNA is extracted from the cells. It is cut into fragments with restriction
enzymes. The fragments of DNA also contain VNTRS (Variable Number Tandem
Repeats) which vary in number from person to person.
(ii) DNA fragments are passed through gel electrophoresis. Fragments of
particular size having VNTRs are multiplied using PCR. Alkaline chemical is used
to split dsDNA to ssDNA.
(iii) Separated DNA sequences are transferred from gel onto a nitrocellulose or
nylon membrane.
(iv) Radioactive DNA probes complementary to VNTRS are poured over the nylon
membrane. Some of them bind with VNTRS (Southern Blotting).
(v) X-ray film is exposed to the nylon sheet which gives dark bands at the probe
sites. Thus, hybridised fragments are detected by autoradiography. The dark
bands on X-ray film represent the DNA fingerprints (DNA profiles).
122. (a) DNA fingerprinting is an important tool of forensic science.
The major steps involved in DNA fingerprinting are as follows:
(i) DNA is extracted from the cells. It is cut into fragments with restriction
enzymes. The fragments of DNA also contain VNTRS (Variable Number Tandem
Repeats) which vary in number from person to person.
(ii) DNA fragments are passed through gel electrophoresis. Fragments of
particular size having VNTRs are multiplied using PCR. Alkaline chemical is used
to split dsDNA to ssDNA.
(iii) Separated DNA sequences are transferred from gel onto a nitrocellulose or
nylon membrane.
(iv) Radioactive DNA probes complementary to VNTRS are poured over the nylon
membrane. Some of them bind with VNTRS (Southern Blotting).
(v) X-ray film is exposed to the nylon sheet which gives dark bands at the probe
sites. Thus, hybridised fragments are detected by autoradiography. The dark
bands on X-ray film represent the DNA fingerprints (DNA profiles).
(b) Applications of DNA fingerprinting are as follows:
(i) Paternity or maternity disputes can be solved by DNA fingerprinting as it can
identify the real genetic mother, father and the offspring.
(ii) This technique is being used to identify genes connected with hereditary
diseases.
123. (a) Satellite DNA or repetitive DNA forms the basis of DNA fingerprinting.
Two features of satellite DNA are:
(i) They do not code for any protein.
(ii) These sequences show high degree of polymorphism.
(b) The major steps involved in DNA fingerprinting are as follows:
(i) DNA is extracted from the cells. It is cut into fragments with restriction
enzymes. The fragments of DNA also contain VNTRS (Variable Number Tandem
Repeats) which vary in number from person to person.
(ii) DNA fragments are passed through gel electrophoresis. Fragments of
particular size having VNTRs are multiplied using PCR. Alkaline chemical is used
to split dsDNA to ssDNA.
(iii) Separated DNA sequences are transferred from gel onto a nitrocellulose or
nylon membrane.
(iv) Radioactive DNA probes complementary to VNTRS are poured over the nylon
membrane. Some of them bind with VNTRS (Southern Blotting).
(v) X-ray film is exposed to the nylon sheet which gives dark bands at the probe
sites. Thus, hybridised fragments are detected by autoradiography. The dark
bands on X-ray film represent the DNA fingerprints (DNA profiles).
Applications of DNA fingerprinting are as follows:
(i) Paternity or maternity disputes can be solved by DNA fingerprinting as it can
identify the real genetic mother, father and the offspring.
(ii) This technique is being used to identify genes connected with hereditary
diseases.
(iii) It is useful in detection of crime and legal pursuits.
(iv) It can identify racial groups, their origin, historical migrations and invasions.
10. (b): Promoter site for transcription is located at 5'-end (upstream) of the
coding strand while terminator site is located towards 3'-end (downstream) of
the coding strand.
11. (b): In eukaryotes, mature RNA consists of exons (coding sequences) only and
introns (non-coding sequences) are removed from the hnRNA by the process of
RNA splicing.
12. (c)
13. (c): (i) Promoter site, (ii) Sigma factor and (iii) RNA polymerase.
14. (b)
15. (a) The hnRNA undergoes processes called capping and tailing followed by
splicing. In capping, an unusual nucleotide (methyl guanosine triphosphate) is
added to the 5'-end of hnRNA. In tailing, adenylate residues (about 200-300) are
added at 3'-end in a template independent manner. Now the hnRNA undergoes a
process where the introns are removed and exons are joined to form mRNA
called splicing.
(b) Due to mutation in gene encoding RNA polymerase I and III, the process of
translation will not happen, thus the polypeptide synthesis is stopped or
hampered.
The reason for the above is:
RNA polymerase I transcribes rRNAs which is the cellular factory for protein
synthesis.
RNA polymerase III helps in transcription of tRNA which is the adaptor molecule,
that transfers amino acids to the site of protein synthesis.
16. A polypeptide of 24 amino acids will be formed as UAA is a stop codon which
will prevent further translation.
17. (b): A-Methionine, B-UAC
18. (c)
19. (a) X to Y is 5'→3'
No more amino acids will be added after stop codon UAA.
(b) Codon-GCA; Anticodon-CGU
(c) The untranslated regions are required for an efficient translation process.
They are present before the initiation codon at the 5'-end and after the
stop/termination codon, at the 3'-end.
20. (a): Lactose is the substrate for the enzyme beta galactosidase and it
regulates switching on and off of the operon. If lactose is present, it inactivates
the repressor by binding to it thus, allowing transcription of genes. If lactose is
absent, repressor binds to the operator region and prevents RNA polymerase
from transcribing the operon.
21. (a) When the active site of enzyme permease present in the cell membrane of
a bacterium has been blocked by an inhibitor, the lactose is not transported into
the cell. As lactose is the inducer, the lac operon will not be switched on.
(b) Since the repressor protein synthesized by the i gene is abnormal, it will not
bind to the operator region of the operon, resulting in a continuous state of
transcription process.
(c) No, because galactose is not an inducer. It is a product of lactose metabolism.
22. (a)
23. (c): Minisatellites are short non-coding but inheritable sequence of bases
which are repeated many times and vary in number from person to person.
24. (c): Children 1 and 3 belong to the parents as their VNTR bands are matching
with the parents.