Mod8 Review in Biochem
Mod8 Review in Biochem
Mod8 Review in Biochem
1.GLYCOLYSIS
2.KREBS CYCLE
3.ELECTRON
TRANSPORT
CHAIN
Aerobic and Anaerobic Respiration
• AEROBIC – NEEDS
OXYGEN
• ANAROBIC – NO OXYGEN
NEEDED
Glycolysis
glycos – sugar + lysis (splitting)
• Anaerobic respiration
• A series of biochemical reactions that splits glucose into
two pyruvates
• Happens in the cytoplasm
Step 1 Step 2
• HEXOKINASE • PHOSPHOGLUCOSE ISOMERASE
• Conversion of D-glucose into – Rearrangement of glucose-6-
glucose-6-phosphate phosphate into fructose 6-
phosphate
Step 3 Step 4
• PHOSPHOFRUCTOKINASE • ALDOLASE
• Changes fructose 6-phosphate • Splits fructose 1,6-bisphosphate
into fructo 1,6 bisphosphate into two sugars
• Mg atom – shield the negative • Dihydroxyacetone phosphate (DHAP)
charges in the phosphate • Glyceraldehyde 3-phosphate
molecule
Step 5 Step 6
• TRIOSEPHOSPHATE ISOMERASE • GLYCERALDEHYDE -3-
• interconverts the molecules PHOSPHATE DEHYDROGENASE
dihydroxyacetone phosphate • dehydrogenates and adds an
(DHAP) and glyceraldehyde 3- inorganic phosphate to
phosphate(GAP) glyceraldehyde 3-phosphate
Step 7 Step 8
• PHOSPHOGLYCERATE KINASE • PHOPHOGYCERATE MUTASE
• transfers a phosphate group from • relocates the phosphate group of
1,3 bisphosphoglycerate to adp to 3-phosphoglycerate from the 3rd
form atp and 3-phosphoglycerate carbon to the 2nd carbon to form
2- phosphoglycerate
Step 9 Step 10
• ENOLASE • pyruvate kinase
• removes a molecule of water from • transfers a phosphate group from
2-phosphoglycerate to form phosphoenolpyruvate (PEP) to
phosphoenol pyruvate (PEP) ADP to form pyruvic acid and ATP
KREBS CYCLE
• TriCarboxylic Acid (TCA) cycle
• In prokaryotic cells, the citric acid cycle occurs in the cytoplasm
• In eukaryotic cells, the citric acid cycle takes place in the matrix of the mitochondria.
• “Sir Hans Adolf Krebs” (1900 to 1981)
• He shared the Nobel Prize for physiology and Medicine in 1953 with Fritz Albert Lipmann, the
father of ATP cycle.
• The process oxidises glucose derivatives, fatty acids and amino acids to carbon dioxide
(CO2) through a series of enzyme controlled steps
• The purpose of the Krebs Cycle is to collect (eight) high-energy electrons from these
fuels by oxidising them, which are transported by activated carriers NADH and FADH2 to
the electron transport chain
• The Krebs Cycle is also the source for the precursors of many other molecules, and is
therefore an amphibolic pathway (meaning it is both anabolic and catabolic).
Net Equation
acetyl CoA + 3 NAD + FAD + ADP + HPO4-2 —————> 2 CO2 + CoA + 3
NADH+ + FADH+ + ATP
Reaction 1: Formation of Citrate
•
Oxidative phosphorylation occurs over a number of distinct steps:
• Proton pumps create an electrochemical gradient (proton motive force)
• ATP synthase uses the subsequent diffusion of protons (chemiosmosis) to synthesize ATP
• Oxygen accepts electrons and protons to form water
•
Chemiosmosis hypothesis
• Movement of ions from low to
high concentration to generate a
chemical gradient
Step 1: Generating a Proton Motive
Force
• The hydrogen carriers (NADH and
FADH2) are oxidised and release
high energy electrons and protons
• The electrons are transferred to
the electron transport chain, which
consists of several transmembrane
carrier proteins
• As electrons pass through the
chain, they lose energy – which is
used by the chain to pump protons
(H+ ions) from the matrix
• The accumulation of H+ ions within
the intermembrane space creates
an electrochemical gradient (or a
proton motive force)
Step Two: ATP Synthesis via
Chemiosmosis
• The proton motive force will
cause H+ ions to move down
their electrochemical gradient
and diffuse back into matrix
• This diffusion of protons is
called chemiosmosis and is
facilitated by the
transmembrane enzyme ATP
synthase
• As the H+ ions move through
ATP synthase they trigger the
molecular rotation of the
enzyme, synthesising ATP
Step Three: Reduction of Oxygen
• In order for the electron transport
chain to continue functioning, the de-
energised electrons must be removed
• Oxygen acts as the final electron
acceptor, removing the de-energised
electrons to prevent the chain from
becoming blocked
• Oxygen also binds with free protons in
the matrix to form water – removing
matrix protons maintains the hydrogen
gradient
• In the absence of oxygen, hydrogen
carriers cannot transfer energised
electrons to the chain and ATP
production is halted
Summary: Oxidative
Phosphorylation
• Hydrogen carriers donate high energy electrons to the electron transport chain (located on the
cristae)
• As the electrons move through the chain they lose energy, which is transferred to the electron
carriers within the chain
• The electron carriers use this energy to pump hydrogen ions from the matrix and into the
intermembrane space
• The accumulation of H+ ions in the intermembrane space creates an electrochemical gradient (or a
proton motive force)
• H+ ions return to the matrix via the transmembrane enzyme ATP synthase (this diffusion of ions is
called chemiosmosis)
• As the ions pass through ATP synthase they trigger a phosphorylation reaction which produces ATP
(from ADP + Pi)
• The de-energised electrons are removed from the chain by oxygen, allowing new high energy
electrons to enter the chain
• Oxygen also binds matrix protons to form water – this maintains the hydrogen gradient by removing
H+ ions from the matrix
• https://ib.bioninja.com.au/_Media/electron-transport-chain-2.mp4
OTHER TYPES OF CELLULAR RESPIRATION
• Lactic acid fermentation
• 6 carbon sugars, such as glucose are converted into energy in the form of ATP.
• However, during this process, lactate is also released, which in solution becomes
lactic acid.
• It can occur in animal cells (such as muscle cells) as well as some prokaryotes
• In humans, the lactic acid build-up in muscles can occur during vigorous exercise
when oxygen is not available
• The aerobic respiration pathway is switched to the lactic acid fermentation
pathway in the mitochondria which although produces ATP
• it is not as efficient as aerobic respiration
• The lactic acid build-up in muscles can also be painful.
•
Alcoholic Fermentation
• Alcoholic fermentation (also known as ethanol fermentation)
• process that converts sugars into ethyl alcohol and carbon dioxide
• It is carried out by yeast and some bacteria
• used by humans in the process of making alcoholic drinks such as wine and beer
• During alcoholic fermentation, sugars are broken down to form pyruvate molecules in a
process known as glycolysis
• Two molecules of pyruvic acid are generated during the glycolysis of a single glucose
molecule
• These pyruvic acid molecules are then reduced to two molecules of ethanol and two
molecules of carbon dioxide
• The pyruvate can be transformed into ethanol under anaerobic conditions where it begins
by converting into acetaldehyde, which releases carbon dioxide, and acetaldehyde is
converted into ethanol
• In alcoholic fermentation, the electron acceptor NAD+ is reduced to form NADH and this
exchange of electrons helps to generate ATP